Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 5e-17 seq2 77.0 1e-11 seq1 77.0 1e-11 >seq5 Length=1427117 Score = 95.1 bits (104), Expect = 5e-17 Identities = 115/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 141595 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 141537 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 141536 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 141477 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 ||| ||| | |||||||| || |||||| ||| Sbjct 141476 GAATGAGCAATTAAAAAGTACCTGAAATCGTT 141445 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 140894 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 140835 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 140834 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 140775 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 140774 GTCACGTTTAGGGGCGA 140758 >seq2 Length=814089 Score = 77.0 bits (84), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAA---ATTTCTTCTAAAGCTA 96 |||||| ||| ||| | || ||| |||| || | | || ||||| |||||||| Sbjct 134616 GAGTCGTGTTCTTTAAAATTGGAGCACTAA-TGTGTGTGAACGCATTTCACATAAAGCTA 134558 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTT 155 ||||| | || ||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 134557 AATATGTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGAACTCA 134498 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 |||| ||| ||||| || || |||||| ||| Sbjct 134497 GGAATGAGGATTAAACAGAACCTGAAATCGTT 134466 >seq1 Length=862331 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 ||||||||||||| | |||||||||||| ||||||| |||| ||||||||||| Sbjct 760051 TAAAGCTAAATATGCGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAT 760110 Query 148 AGCACTTTGGAAAGAGAG-TTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | ||||| || || |||||| ||| Sbjct 760111 AGTACTCAGGAATGAGCGATTAAATAGTACCTGAAATCGTT 760151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079991977700