Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 486 6e-135 seq5 455 1e-125 seq2 275 2e-71 seq8 104 8e-20 >seq3 Length=1351876 Score = 486 bits (538), Expect = 6e-135 Identities = 453/577 (79%), Gaps = 44/577 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 901775 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 901716 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA---ACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | ||| Sbjct 901715 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAGTCGG 901656 Query 124 ATCGG--------CCC---GCGAAGGACC-----TTAACGCCAGAAA-----ATGGTCGG 162 | | | | |||| || |||| | | || || |||| Sbjct 901655 GAGGAAAGTGAAACACTATGAGAAGTGCCACTTATTAATTCAATTAATATGAATACTCGG 901596 Query 163 TGAA--GACCAGT-----TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 ||| || | | ||| | ||| | ||||||||| ||| ||| |||||||| Sbjct 901595 CGAACCGAGTAATATATTTCCCCATCAATAGATAAGTAAAACAACTCTAAAAGTAGTGGT 901536 Query 216 ATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTCAAG 262 |||||||| || |||| ||||||||||| |||||||||| ||| Sbjct 901535 ATTTCACTGTCGTAAAAACATATTTCAGTTTCTACTCCCACTTATGCTACACCTCTTAAG 901476 Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC 322 || |||||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 901475 TCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTG 901416 Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 901415 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCT 901356 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901355 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 901296 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| Sbjct 901295 GTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATTCAA 901236 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 ||||||||||||||||||||||| || || | || || Sbjct 901235 AGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 901199 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1203748 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1203689 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1203688 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1203642 >seq5 Length=1427117 Score = 455 bits (504), Expect = 1e-125 Identities = 322/369 (87%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----- 236 || ||||| |||||| |||| ||| |||||||||||||||| || | || Sbjct 138881 ATGGATTA-GTAAAACAACGTTAAAAGTAGTGGTATTTCACTGTTGCAAAGACCTTGCGA 138939 Query 237 ------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| || Sbjct 138940 TCTCTACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAA 138999 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 139000 GCTCAACAGGGTCTTCTTTCCCCGCTGATTTAGCCAAGCCCGTTCCCTTGGCTGTGGTTT 139059 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139060 CGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 139119 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 139120 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGC 139179 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||| || | Sbjct 139180 GCTTAATTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTA 139239 Query 531 ACATCACTT 539 | | || || Sbjct 139240 ATACCAGTT 139248 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 138649 CTTTTAGTCTACAAGAGATTTCTGTTCTCTCTGAGCTTGTCTTTGGACATCTGCGTTATT 138708 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 138709 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGACTATGTC 138755 >seq2 Length=814089 Score = 275 bits (304), Expect = 2e-71 Identities = 246/298 (83%), Gaps = 13/298 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||| | ||||| ||| ||||| | |||| |||| ||||| || Sbjct 131753 CTCCCACTTATGCTACACCTTTTAAGTCGATTCGCAAAGCCAGACTGGAGTAAAGCTGAA 131812 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG-TTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| Sbjct 131813 CAGGGTCTTCTTTCCCAGCTGATTTGGCCAAGCCCGTTTCCCTTGGCTGTGGTTTCGCTA 131872 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA-TTAGA 414 ||||| | ||||||||||||||||||||||||||||| |||||||||| || || | Sbjct 131873 GATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATCCATGCGCGTCGTAAATTTTTA 131932 Query 415 TGACGAGGC-ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||||||||| || |||||| ||||||| | || ||||| ||| || ||| ||||| Sbjct 131933 TGACGAGGCAATATGGCTA--TTAAGAGTG----AG-CACTCCTGCCATTAACCTGCGCT 131985 Query 474 TGGTTGAA-TTTC-TTCACTTTGA-CATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 || |||| |||| || ||||| ||||| |||||||||||||||||||| || || Sbjct 131986 TGACTGAACTTTCAACCAATTTGATAATTCAAAGCACTGGGCAGAAATCACACTGTGT 132043 >seq8 Length=1701825 Score = 104 bits (114), Expect = 8e-20 Identities = 144/202 (71%), Gaps = 21/202 (10%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACG---------------GCTCCCACTTATTCTACAC 254 ||||||||||||||||||| ||| | |||||||||||| |||||| Sbjct 113485 AGTGGTATTTCACTTGCGCGGAACCCTTCTTTCAGAATTCCGCTCCCACTTATGCTACAC 113544 Query 255 C-TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CC 311 || ||| | || |||| || | || ||||| || | || |||||||||| | || Sbjct 113545 AATCGGAAGCCGTTCCACAGAGCCTACCTGGAGTCGAGTTAAATAGGGTCTTCTATGACC 113604 Query 312 CCGCTGATTCCGCCAAGCCCGT---TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 | |||||| ||||||| || |||||||| |||||||||||||||| | | |||| Sbjct 113605 CAACTGATTTAACCAAGCCTGTATATCCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGG 113664 Query 369 GACAGTGGGAATCTCGTTAATC 390 ||||| ||||| | ||| ||| Sbjct 113665 GACAGCAGGAATTTTGTTTATC 113686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635193884352