Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3 260 4e-67 seq5 212 2e-52 seq2 212 2e-52 seq6 149 2e-33 >seq3 Length=1351876 Score = 260 bits (288), Expect = 4e-67 Identities = 377/523 (72%), Gaps = 42/523 (8%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 898977 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 898919 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 898918 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 898859 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 898858 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 898800 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---------AACCATCG 234 || || |||| |||| |||| ||||||| |||||| | || || || || | Sbjct 898799 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 898740 Query 235 CCGGCTCAAGGCCATG-CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG 293 ||| || | | || || ||| || ||||| || || ||| || Sbjct 898739 ACGGATCCATTACGTGTCGCTTCTTT--GTTATAAT---TCCTTAAG------TTAATAA 898691 Query 294 CGTTGGTTTTTTA-----TCTAATAAATACACCCCTTCCGAAGT------CGGGGTTTTT 342 | || ||| ||| ||| || |||| | || ||| | | | | Sbjct 898690 CTTT--TTTCTTAAAAGGCTTAACAAGTACA-CACTCAAGAAATGAATCAAGAGTGCTAA 898634 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 898633 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAA--AAATGTCAAGTAGA 898576 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 898575 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATACGCATATACTTTCA 898516 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 898515 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 898473 >seq5 Length=1427117 Score = 212 bits (234), Expect = 2e-52 Identities = 183/224 (82%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| ||| | | ||||| ||||| ||||||||||||| | Sbjct 151852 TCATTCCAATTACAAAACCAGTTTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCT 151911 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 151912 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 151971 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| | ||| ||||| Sbjct 151972 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCAATGTTAGGC 152030 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 152031 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 152074 Score = 123 bits (136), Expect = 8e-26 Identities = 127/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 152201 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAAAAAA-TGTCAAGTAGA 152259 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT---TGCTTATACTTAG 459 ||||||| ||||||||||| ||||||||||| |||| | ||| | ||||| Sbjct 152260 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCCGCATATAAAAATATGCATGTACTTTC 152319 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 152320 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 152363 >seq2 Length=814089 Score = 212 bits (234), Expect = 2e-52 Identities = 183/224 (82%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| ||| | | ||||| ||||| ||||||||||||| | Sbjct 138228 TCATTCCAATTACAAAACCAGTTTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCT 138287 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 138288 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 138347 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| | ||| ||||| Sbjct 138348 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCAATGTTAGGC 138406 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 138407 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 138450 Score = 131 bits (144), Expect = 5e-28 Identities = 128/163 (79%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 138577 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAAA--AATGTCAAGTAGA 138634 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 138635 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 138694 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 138695 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 138737 >seq6 Length=1091801 Score = 149 bits (164), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTAT-TTATTGTCACTACCTCCCC 64 ||||||||||| || | ||| | ||| ||||| || || ||||||||||||| | Sbjct 982318 CATTCCAATTATAA-AGCCATATTGGCCTTGTATTGTTAACTTCTTGTCACTACCTCTCT 982260 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGC----------CTTCCTTGGATGTGGTA 114 | | ||||||||||| | | | |||||| ||||||| ||||||||| Sbjct 982259 TCTTTAGAGTTGGGTAATTTACTCCCATGCTGCTATATGCTGCCTTCCTTAGATGTGGTA 982200 Query 115 GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-C 173 || ||||||| |||||||||| |||||||||| |||||||||||| |||| | ||| | Sbjct 982199 GCTATTTCTCAAGCTCCCTCTCGGGAATCGAACTATAATTCCCCGTTGCCCG-TCATAGC 982141 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||| ||||||| || |||| |||| |||| ||||||| |||||| Sbjct 982140 CATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAA 982096 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/108 (80%), Gaps = 9/108 (8%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT--AGAT---TGCTTATA--CTT 457 ||||||| ||||||||||| ||||||||||| ||| | || ||| |||| ||| Sbjct 981896 ATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATGCAAATATATGCGTATATCCTT 981837 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGC--ATATGACTACTGGCA 503 || ||||| ||||||||||||||||||| ||||||||||||||| Sbjct 981836 TCACTAGCATGACTTAATCTTTGAGACAAGCGTATATGACTACTGGCA 981789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394351104