Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13 145 6e-30 >seq13 Length=2073822 Score = 145 bits (160), Expect = 6e-30 Identities = 506/785 (64%), Gaps = 6/785 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || | |||||| || || | ||||| |||| ||||||||| | |||||| ||| Sbjct 559889 GAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAG 559830 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || || || ||||||||||||||| | ||||| || ||| || | || Sbjct 559829 AGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCT 559770 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||||| |||||| ||| || || || | || || | ||||| ||| || Sbjct 559769 TTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGG 559710 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCG---TAGAGG 66250 | | || || || | |||| | ||| | ||| | || || | || | Sbjct 559709 TCCTGCGCAAGGACGGTTT-TCTTGCCC-ATATTTTC-TTCCTCATATTTGGTATATAAC 559653 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 | |||||| || |||||| |||| || | |||||| | | || ||||||| Sbjct 559652 TTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAA 559593 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | ||||| || | | ||| | ||||||||| ||||||| ||| | ||||||| Sbjct 559592 GTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAG 559533 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 || ||||| | |||| | |||| || | |||||||||||||| | ||| | || || Sbjct 559532 AACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCG 559473 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 || ||||| | ||||| ||||| | ||| | ||||| || || | | || || || Sbjct 559472 AAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACCTTTTCTCTTTCCCCCC 559413 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 |||||||| || || | ||| | || || || | || ||| || || | |||||| Sbjct 559412 CCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTG 559353 Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGA 66610 || |||| || || || |||| || | | ||| ||||| || || || Sbjct 559352 GAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGCCCCCTAATATCCTGCACGGCCACT 559293 Query 66611 CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCG 66670 ||||| ||||| ||||| || || ||||| | | ||| |||||||| Sbjct 559292 CCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCT 559233 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 ||||| ||||| || ||| ||||| | || ||| | || || ||||||| Sbjct 559232 TCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTC 559173 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 | | ||| | || ||||| ||||| || || || | ||||||| || |||| Sbjct 559172 CCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTAC 559113 Query 66791 GTCTC 66795 ||||| Sbjct 559112 GTCTC 559108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566187835360