Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-32 seq10 141 1e-31 seq3 141 1e-31 seq2 141 1e-31 seq6 75.2 2e-11 >seq5 Length=1370936 Score = 145 bits (160), Expect = 1e-32 Identities = 190/265 (72%), Gaps = 36/265 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || |||| ||| |||||||||| ||| | Sbjct 106713 GTACAAAGGGCAGGGACGTAGTCAGCACAATCTA-ATGAATCGTGCTTACTAGGCATT-C 106770 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 106771 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 106830 Query 119 TACCCGGACCTGTCGG--------------------CCAAGGTGA----TA--------G 146 |||| || | || | |||| ||| || Sbjct 106831 TACCTACACTTTTCAGTGGAGGAAAAATACGTAACAGCAAGCTGAATCGTAATTTTAATA 106890 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 106891 ACTCGTTGTACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 106950 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 106951 CCTGTTGTTGCCTTAAACTTCCTTG 106975 >seq10 Length=1419739 Score = 141 bits (156), Expect = 1e-31 Identities = 189/265 (71%), Gaps = 36/265 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 12097 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 12154 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 12155 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 12214 Query 119 TACCCGGACCTGTCGG--------------------CCAAGGTGA----TA--------G 146 |||| || | || | |||| ||| || Sbjct 12215 TACCTACACTTTTCAGTGGAGGAAAAATACGAAACAGCAAGCTGAATCGTAATTTTAATA 12274 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 12275 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 12334 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 12335 CCTGTTGTTGCCTTAAACTTCCTTG 12359 >seq3 Length=1011127 Score = 141 bits (156), Expect = 1e-31 Identities = 189/265 (71%), Gaps = 36/265 (14%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 807865 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 807808 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 807807 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 807748 Query 119 TACCCGGACCTGTCGG--------------------CCAAGGTGA----TA--------G 146 |||| || | || | |||| ||| || Sbjct 807747 TACCTACACTTTTCAGTGGAGGAAAAATACGAAACAGCAAGCTGAATCGTAATTTTAATA 807688 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 807687 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 807628 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 807627 CCTGTTGTTGCCTTAAACTTCCTTG 807603 >seq2 Length=755035 Score = 141 bits (156), Expect = 1e-31 Identities = 189/265 (71%), Gaps = 36/265 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 146318 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 146375 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 146376 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 146435 Query 119 TACCCGGACCTGTCGG--------------------CCAAGGTGA----TA--------G 146 |||| || | || | |||| ||| || Sbjct 146436 TACCTACACTTTTCAGTGGAGGAAAAATACGAAACAGCAAGCTGAATCGTAATTTTAACA 146495 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 146496 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 146555 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 146556 CCTGTTGTTGCCTTAAACTTCCTTG 146580 >seq6 Length=1033388 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||||||| ||| | | || ||| || ||||||||| || ||| Sbjct 441778 GTACAAAGCGCAGGGACGTAGTCAGCGCAATC-TGGTGAATCCCGCTTACTA-GACGTTC 441835 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||| | ||| | ||||||| || ||||| ||||||||| Sbjct 441836 CTCGGTCGAGATTGATAATTGCA---ATATATCCTCATCACGAT 441876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751979980820