Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq559 174 3e-41 seq10 120 6e-25 seq3 120 6e-25 seq2 114 2e-23 seq6 96.9 6e-18 seq5 87.8 3e-15 >seq559 Length=1610 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 908 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 967 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 968 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 1026 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 1027 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 1086 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 1087 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 1146 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 1147 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1183 >seq10 Length=1419739 Score = 120 bits (132), Expect = 6e-25 Identities = 188/265 (71%), Gaps = 27/265 (10%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--------CTTTGCTCG----AATAC 122 ||||||||| |||||||||||||||||||| | | |||| || ||||| Sbjct 13205 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTGCGCGTTTGAATAC 13146 Query 123 ATTAGCATGGAATAATAGAATAGGAC--GTGCG------GTTCTATTTTGTTGGTTTCTA 174 |||||||||||| | ||| | || || | ||||| |||| || ||| Sbjct 13145 TACAGCATGGAATAACAAAATTGAACAAGTCAGAATTTTGTTCTTTTTTCTTATTTT--- 13089 Query 175 GGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 || | || | |||||||||| ||| | ||||| | ||||||| |||||||||| Sbjct 13088 GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGT 13031 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||| ||||| || |||| ||| ||||||||||| || || | || || || Sbjct 13030 GAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCA 12971 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 12970 TTAATCA-AGAACGAAAGTTAAGGG 12947 >seq3 Length=1011127 Score = 120 bits (132), Expect = 6e-25 Identities = 188/265 (71%), Gaps = 27/265 (10%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--------CTTTGCTCG----AATAC 122 ||||||||| |||||||||||||||||||| | | |||| || ||||| Sbjct 806757 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTGCGCGTTTGAATAC 806816 Query 123 ATTAGCATGGAATAATAGAATAGGAC--GTGCG------GTTCTATTTTGTTGGTTTCTA 174 |||||||||||| | ||| | || || | ||||| |||| || ||| Sbjct 806817 TACAGCATGGAATAACAAAATTGAACAAGTCAGAATTTTGTTCTTTTTTCTTATTTT--- 806873 Query 175 GGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 || | || | |||||||||| ||| | ||||| | ||||||| |||||||||| Sbjct 806874 GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGT 806931 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||| ||||| || |||| ||| ||||||||||| || || | || || || Sbjct 806932 GAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCA 806991 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 806992 TTAATCA-AGAACGAAAGTTAAGGG 807015 >seq2 Length=755035 Score = 114 bits (126), Expect = 2e-23 Identities = 188/266 (71%), Gaps = 29/266 (11%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--------CTTTGCTCG----AATAC 122 ||||||||| |||||||||||||||||||| | | |||| || ||||| Sbjct 147426 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTGCGCGTTTGAATAC 147367 Query 123 ATTAGCATGGAATAATAGAATAGGAC--GTGCG-------GTTCTATTTTGTTGGTTTCT 173 |||||||||||| | ||| | || || | ||||| |||| || ||| Sbjct 147366 TACAGCATGGAATAACA-AATTGAACAAGTCAGAATTTTTGTTCTTTTTTCTTATTTT-- 147310 Query 174 AGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGG 232 || | || | |||||||||| ||| | ||||| | ||||||| ||||||||| Sbjct 147309 -GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGG 147253 Query 233 TGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTC 292 |||||||||| ||||| || |||| ||| ||||||||||| || || | || || | Sbjct 147252 TGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCC 147193 Query 293 ATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| |||||||||||| ||| Sbjct 147192 ATTAATCA-AGAACGAAAGTTAAGGG 147168 >seq6 Length=1033388 Score = 96.9 bits (106), Expect = 6e-18 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| || ||| ||||| | ||||||| ||||||||||||||||||| ||| Sbjct 442850 GATTAATTGGAGTAGCATGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGAT 442791 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| ||||||||||| || || | || || ||||||||| |||| Sbjct 442790 TTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAAC 442732 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 442731 GAAAGTTAAGGG 442720 >seq5 Length=1370936 Score = 87.8 bits (96), Expect = 3e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188 GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| |||| |||| | ||||||| |||||||||||||||||| ||| Sbjct 107758 GATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGTGAAATTCTAAGAT 107699 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| |||||||| || || | | || || ||||||||| |||| Sbjct 107698 TTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCATTAATCA-AGAAC 107640 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 107639 GAAAGTTAAGGG 107628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915174850304