Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 5e-17 seq10 93.3 2e-16 seq3 93.3 2e-16 seq1 77.0 1e-11 seq2 75.2 5e-11 >seq5 Length=1370936 Score = 95.1 bits (104), Expect = 5e-17 Identities = 115/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 97872 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 97814 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 97813 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 97754 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 ||| ||| | |||||||| || |||||| ||| Sbjct 97753 GAATGAGCAATTAAAAAGTACCTGAAATCGTT 97722 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||||||| || | |||||||| || ||||||| || || || ||| Sbjct 97165 TTGAGTATGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 97106 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 97105 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 97046 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 97045 ATCACGTTTAGGGGCGA 97029 >seq10 Length=1419739 Score = 93.3 bits (102), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 10782 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTCGTGTGATACATTTCACATAAAGCTAAA 10723 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 10722 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 10663 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 10662 AATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 10623 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 10151 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 10092 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 10091 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 10032 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 10031 GTCACGTTTAGGGGCGA 10015 >seq3 Length=1011127 Score = 93.3 bits (102), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 809182 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTCGTGTGATACATTTCACATAAAGCTAAA 809241 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 809242 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 809301 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 809302 AATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 809341 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 809813 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 809872 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 809873 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 809932 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 809933 GTCACGTTTAGGGGCGA 809949 >seq1 Length=830022 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 ||||||||||||| | |||||||||||| ||||||| |||| ||||||||||| Sbjct 763066 TAAAGCTAAATATGCGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAT 763125 Query 148 AGCACTTTGGAAAGAGAG-TTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | ||||| || || |||||| ||| Sbjct 763126 AGTACTCAGGAATGAGCGATTAAATAGTACCTGAAATCGTT 763166 >seq2 Length=755035 Score = 75.2 bits (82), Expect = 5e-11 Identities = 82/108 (76%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 81 ATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAA 140 ||||| ||||||||||||| | || ||||||||| ||||||| |||| |||| Sbjct 144052 ATTTCACATAAAGCTAAATATGTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAA 143993 Query 141 GATGAAA-AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 ||||||| || ||| |||| ||| ||||| || || |||||| ||| Sbjct 143992 GATGAAATAGAACTCAGGAATGAGGATTAAACAGAACCTGAAATCGTT 143945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079941055400