Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq559 167 4e-39 seq10 152 8e-35 seq5 152 8e-35 seq3 152 8e-35 seq2 152 8e-35 seq6 111 3e-22 >seq559 Length=1610 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1551 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1492 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1491 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 1435 >seq10 Length=1419739 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 12549 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 12608 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 12609 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 12667 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |||||| Sbjct 12289 TCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGACCTGTTGTTGCCTT 12348 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 12349 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 12389 >seq5 Length=1370936 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 107230 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 107289 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||| |||||||||| Sbjct 107290 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTCTCAATCTGTC 107348 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |||||| Sbjct 106905 TCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGACCTGTTGTTGCCTT 106964 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 106965 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 107005 >seq3 Length=1011127 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 807413 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 807354 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 807353 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 807295 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |||||| Sbjct 807673 TCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGACCTGTTGTTGCCTT 807614 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 807613 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 807573 >seq2 Length=755035 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 146770 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 146829 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 146830 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 146888 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |||||| Sbjct 146510 TCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGACCTGTTGTTGCCTT 146569 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 146570 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 146610 >seq6 Length=1033388 Score = 111 bits (122), Expect = 3e-22 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||||||||||||||||| | ||||| ||||||| ||||||| | ||| Sbjct 442313 GCTACTTAGCAGGTTAAGGTCTCGTTCATCATCGGGATTAACCCGACAAAT--ATTCACG 442370 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||| | ||||||||||| ||||| ||| ||||||||||||||| || Sbjct 442371 AACTGAAAACGGCCATGCGTCACCATCCAAGAAATCAAGAAAGAGCTCTC 442420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796778788188