Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10 291 1e-76 seq5 291 1e-76 seq3 291 1e-76 seq2 242 6e-62 seq6 203 6e-50 seq1 77.0 6e-12 >seq10 Length=1419739 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 7659 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 7718 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 7719 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 7778 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 7779 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 7838 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 7839 CTGTGGTAACTTTTCAGACACCTCTA 7864 >seq5 Length=1370936 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 94572 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 94631 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 94632 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 94691 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 94692 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 94751 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 94752 CTGTGGTAACTTTTCAGACACCTCTA 94777 >seq3 Length=1011127 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 812305 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 812246 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 812245 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 812186 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 812185 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 812126 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 812125 CTGTGGTAACTTTTCAGACACCTCTA 812100 >seq2 Length=755035 Score = 242 bits (268), Expect = 6e-62 Identities = 182/209 (87%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGG-TAAAACTAACCTGTCTCATGACGGTCTAAA--CCCAGCTCACGTTCC 87 |||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 140500 TCATCAGTAGGGGTAAAACTAACCTGTCTCATGACGGTCTAAAAACTCAGCTCACGTTCC 140559 Query 88 CTATTAGTGGG-TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||| ||| |||||||||| || ||| || |||||| || ||||||||||||| Sbjct 140560 CTATTAGCGGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAG 140619 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||| Sbjct 140620 CCGACATCGAAGGATCAAAAAGCTACGTCGCTAAAAACGCTCGGCAGCCACAAGCCAGTT 140679 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||| ||| |||| | | |||||| Sbjct 140680 ATCCCTGT-GTAGCTTTCCAGATACCTCT 140707 >seq6 Length=1033388 Score = 203 bits (224), Expect = 6e-50 Identities = 161/192 (84%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 440725 CAGTAGGGTAAAACTAATTTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 440784 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||| | ||| | || ||| || ||||| ||||||||| ||||| Sbjct 440785 CGGGTGAACAATCCGATACTTTGAAACTTATGCGTCCCAATGATGGGAAGAGCCAACATC 440844 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT-TATCCCTG 213 ||||||||||||| | ||||| || || |||||||| ||||||||||||| ||| | Sbjct 440845 GAAGGATCAAAAAACTGCGTCGTTAGGAGCGCTTGGCAGCCACAAGCCAGTAAATCTACG 440904 Query 214 TGGTAACTTTTC 225 |||||||||||| Sbjct 440905 TGGTAACTTTTC 440916 >seq1 Length=830022 Score = 77.0 bits (84), Expect = 6e-12 Identities = 113/158 (72%), Gaps = 13/158 (8%) Strand=Plus/Minus Query 82 CGTTCCCTATTAGTGG-GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140 |||||| | |||| || ||||||||||| || ||| || |||| | | ||| ||| Sbjct 768096 CGTTCC-TCTTAGCGGAGTGAACAATCCGACACTTTGAGATTTCTTCACCTCAATGTTAG 768038 Query 141 GAAGAGCCGACAT-CGAAGGATC----------AAAAAGCAACGTCGCTATGAACGCTTG 189 |||||||| | || | || ||| ||||||| ||||||||| | |||| | Sbjct 768037 GAAGAGCCTATATTCTAAAAATCGGTGAAAAACAAAAAGCCACGTCGCTACAACCGCTCG 767978 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || ||| ||| ||||||||||||| || || |||||| Sbjct 767977 GCAGCCGCAATTCAGTTATCCCTGTAGTGACCTTTCTG 767940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854376521088