Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 486 6e-135 seq10 477 3e-132 seq2298 473 4e-131 seq5 455 1e-125 seq2 269 9e-70 seq8 100 9e-19 >seq3 Length=1011127 Score = 486 bits (538), Expect = 6e-135 Identities = 453/577 (79%), Gaps = 44/577 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 811988 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 811929 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA---ACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | ||| Sbjct 811928 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAGTCGG 811869 Query 124 ATCGG--------CCC---GCGAAGGACC-----TTAACGCCAGAAA-----ATGGTCGG 162 | | | | |||| || |||| | | || || ||| Sbjct 811868 GAGGAAAGTGAAACACTATGAGAAGTGCCACTTATTAATTCAATTAATATGAATACCCGG 811809 Query 163 TGAA--GACCAGT-----TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 ||| || ||| ||| | ||| | ||||||||| ||| ||| |||||||| Sbjct 811808 CGAACCGAGTAGTATATTTCCCCATCAATAGATAAGTAAAACAACTTTAAAAGTAGTGGT 811749 Query 216 ATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTCAAG 262 |||||||| || |||| ||||||||||| |||||||||| ||| Sbjct 811748 ATTTCACTGTCGTAAAAACATATTTCAGTTTCTACTCCCACTTATGCTACACCTCTTAAG 811689 Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC 322 || |||||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 811688 TCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTG 811629 Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 811628 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCT 811569 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811568 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 811509 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| Sbjct 811508 GTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATTCAA 811449 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 ||||||||||||||||||||||| || || | || || Sbjct 811448 AGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 811412 >seq10 Length=1419739 Score = 477 bits (528), Expect = 3e-132 Identities = 451/577 (78%), Gaps = 44/577 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 7976 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 8035 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA---ACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | ||| Sbjct 8036 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAGTCGG 8095 Query 124 ATCGG--------CCC---GCGAAGGACC-----TTAACGCCAGAAA-----ATGGTCGG 162 | | | | |||| || |||| | | || || ||| Sbjct 8096 GAGGAAAGTGAAACACTATGAGAAGTGCCACTTATTAATTCAATTAATATGAATACCCGG 8155 Query 163 TGAA--GACCAGT-----TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 ||| || | | ||| ||| | ||||||||| ||| ||| |||||||| Sbjct 8156 CGAACCGAGTAATATATTTCCCAATCAATAGATAAGTAAAACAACTTTAAAAGTAGTGGT 8215 Query 216 ATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTCAAG 262 |||||||| || |||| ||||||||||| |||||||||| ||| Sbjct 8216 ATTTCACTGTCGTAAAAACATATTTCAGTCTCTACTCCCACTTATGCTACACCTCTTAAG 8275 Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC 322 || |||||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 8276 TCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTG 8335 Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 8336 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCT 8395 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8396 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 8455 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| Sbjct 8456 GTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATTCAA 8515 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 ||||||||||||||||||||||| || || | || || Sbjct 8516 AGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 8552 >seq2298 Length=783 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 404 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 345 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 344 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 285 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 284 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 225 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 165 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 164 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 108 Score = 114 bits (126), Expect = 4e-23 Identities = 102/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | | ||||||||||||||||| Sbjct 702 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCATTAGGACACCTGCGTTACC 643 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 642 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 588 Query 127 GGCCCGCG 134 || |||| Sbjct 587 GGGTCGCG 580 >seq5 Length=1370936 Score = 455 bits (504), Expect = 1e-125 Identities = 322/369 (87%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----- 236 || ||||| |||||| |||| ||| |||||||||||||||| || | || Sbjct 95121 ATGGATTA-GTAAAACAACGTTAAAAGTAGTGGTATTTCACTGTTGCAAAGACCTTGCGA 95179 Query 237 ------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| || Sbjct 95180 TCTCTACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAA 95239 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 95240 GCTCAACAGGGTCTTCTTTCCCCGCTGATTTAGCCAAGCCCGTTCCCTTGGCTGTGGTTT 95299 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95300 CGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 95359 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 95360 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGC 95419 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||| || | Sbjct 95420 GCTTAATTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTA 95479 Query 531 ACATCACTT 539 | | || || Sbjct 95480 ATACCAGTT 95488 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 94889 CTTTTAGTCTACAAGAGATTTCTGTTCTCTCTGAGCTTGTCTTTGGACATCTGCGTTATT 94948 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 94949 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGACTATGTC 94995 >seq2 Length=755035 Score = 269 bits (298), Expect = 9e-70 Identities = 245/298 (82%), Gaps = 13/298 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||| | ||||| ||| ||||| | |||| |||| ||||| || Sbjct 141232 CTCCCACTTATGCTACACCTTTTAAGTCGATTCGCAAAGCCAGACTGGAGTAAAGCTGAA 141291 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG-TTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| Sbjct 141292 CAGGGTCTTCTTTCCCAGCTGATTTGGCCAAGCCCGTTTCCCTTGGCTGTGGTTTCGCTA 141351 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA-TTAGA 414 ||||| | |||||||||||||||| |||||||||||| |||||||||| || || | Sbjct 141352 GATAGCAAGTAGGGACAGTGGGAATTTCGTTAATCCATCCATGCGCGTCGTAAATTTTTA 141411 Query 415 TGACGAGGC-ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||||||||| || |||||| ||||||| | || ||||| ||| || ||| ||||| Sbjct 141412 TGACGAGGCAATATGGCTA--TTAAGAGTG----AG-CACTCCTGCCATTAACCTGCGCT 141464 Query 474 TGGTTGAA-TTTC-TTCACTTTGA-CATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 || |||| |||| || ||||| ||||| |||||||||||||||||||| || || Sbjct 141465 TGACTGAACTTTCAACCAATTTGATAATTCAAAGCACTGGGCAGAAATCACACTGTGT 141522 >seq8 Length=1678596 Score = 100 bits (110), Expect = 9e-19 Identities = 143/202 (71%), Gaps = 21/202 (10%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACG---------------GCTCCCACTTATTCTACAC 254 ||||||||||||||||||| ||| | |||||||||||| |||||| Sbjct 133380 AGTGGTATTTCACTTGCGCGGAACCCTTCTTTCAGAATTCCGCTCCCACTTATGCTACAC 133439 Query 255 C-TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CC 311 || ||| | || ||| || | || ||||| || | || |||||||||| | || Sbjct 133440 AATCGGAAGCCGTTCTACAGAGCCTACCTGGAGTCGAGTTAAATAGGGTCTTCTATGACC 133499 Query 312 CCGCTGATTCCGCCAAGCCCGT---TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 | |||||| ||||||| || |||||||| |||||||||||||||| | | |||| Sbjct 133500 CAACTGATTTAACCAAGCCTGTATATCCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGG 133559 Query 369 GACAGTGGGAATCTCGTTAATC 390 ||||| ||||| | ||| ||| Sbjct 133560 GACAGCAGGAATTTTGTTTATC 133581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635155064704