Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq559 383 5e-104 seq2 260 4e-67 seq3 257 5e-66 seq10 226 9e-57 seq5 212 2e-52 seq6 149 2e-33 >seq559 Length=1610 Score = 383 bits (424), Expect = 5e-104 Identities = 420/557 (75%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 711 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 652 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 592 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 591 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 532 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 531 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 472 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 471 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCGCC 412 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 411 CCGGCCGGGGCCGGGGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 353 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 352 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 295 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 294 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 235 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | |||||||||||||||||||||||||||||||| || Sbjct 234 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACMAG 175 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 174 CATATG-CTACTGGCAG 159 >seq2 Length=755035 Score = 260 bits (288), Expect = 4e-67 Identities = 378/523 (72%), Gaps = 42/523 (8%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 147699 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 147757 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 147758 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 147817 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 147818 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 147876 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---------AACCATCG 234 || || |||| |||| |||| ||||||| |||||| | || || || || | Sbjct 147877 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 147936 Query 235 CCGGCTCAAGGCCATG-CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG 293 ||| || | | || || ||| || ||||| || || ||| || Sbjct 147937 ACGGATCCATTACGTGTCGCTTCTTT--GTTATAAT---TCCTTAAG------TTAATAA 147985 Query 294 CGTTGGTTTTTTA-----TCTAATAAATACACCCCTTCCGAAGT------CGGGGTTTTT 342 | || ||| ||| ||| || |||| | || ||| | | | | Sbjct 147986 CTTT--TTTCTTAAAAGGCTTAACAAGTACA-CACTCAAGAAATGAATCAAGAGTGCTAA 148042 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 148043 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAA--AAATGTCAAGTAGA 148100 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| || | || | ||| ||||||| | Sbjct 148101 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 148160 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 148161 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 148203 >seq3 Length=1011127 Score = 257 bits (284), Expect = 5e-66 Identities = 377/522 (72%), Gaps = 40/522 (8%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 806484 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 806426 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 806425 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 806366 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 806365 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 806307 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG---------AACCATCG 234 || || |||| |||| |||| ||||||| |||||| | || || || || | Sbjct 806306 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 806247 Query 235 CCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC 294 ||| || | ||| | ||| | || |||| | || ||| || | Sbjct 806246 ACGGATCCA--TTATGTG--TCGCTTCTTTGTTATAATTCCTTAAG------TTAATAAC 806197 Query 295 GTTGGTTTTTTA-----TCTAATAAATACACCCCTTCCGA----AGTCGGGGTTTTTA-- 343 || ||| ||| ||| || |||| | || || | || | | || Sbjct 806196 TTT--TTTCTTAAAAGGCTTAACAAGTACA-CACTCAAGAAATGAATCAAGAGTGCTAAA 806140 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 806139 GCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAA--AAATGTCAAGTAGAT 806082 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGAC 461 ||||||| ||||||||||| ||||||||||| || | || | ||| ||||||| || Sbjct 806081 TATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCAC 806022 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||||||||||||| Sbjct 806021 TTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 805980 >seq10 Length=1419739 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 13478 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 13536 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 13537 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 13596 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 13597 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 13655 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 13656 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 13699 Score = 131 bits (144), Expect = 5e-28 Identities = 128/163 (79%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 13822 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAAA--AATGTCAAGTAGA 13879 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 13880 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 13939 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 13940 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 13982 >seq5 Length=1370936 Score = 212 bits (234), Expect = 2e-52 Identities = 183/224 (82%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| ||| | | ||||| ||||| ||||||||||||| | Sbjct 108171 TCATTCCAATTACAAAACCAGTTTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCT 108230 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 108231 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 108290 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| | ||| ||||| Sbjct 108291 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCAATGTTAGGC 108349 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 108350 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 108393 Score = 123 bits (136), Expect = 8e-26 Identities = 127/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | ||| || | | |||| || | Sbjct 108520 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGAAAAAAA-TGTCAAGTAGA 108578 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT---TGCTTATACTTAG 459 ||||||| ||||||||||| ||||||||||| |||| | ||| | ||||| Sbjct 108579 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCCGCATATAAAAATATGCATGTACTTTC 108638 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 108639 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 108682 >seq6 Length=1033388 Score = 149 bits (164), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 14/225 (6%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTAT-TTATTGTCACTACCTCCCC 64 ||||||||||| || | ||| | ||| ||||| || || ||||||||||||| | Sbjct 443286 CATTCCAATTATAA-AGCCATATTGGCCTTGTATTGTTAACTTCTTGTCACTACCTCTCT 443344 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCT----------GCCTTCCTTGGATGTGGTA 114 | | ||||||||||| | | | |||| ||||||||| ||||||||| Sbjct 443345 TCTTTAGAGTTGGGTAATTTACTCCCATGCTGCTATATGCTGCCTTCCTTAGATGTGGTA 443404 Query 115 GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-C 173 || ||||||| |||||||||| |||||||||| |||||||||||| |||| | ||| | Sbjct 443405 GCTATTTCTCAAGCTCCCTCTCGGGAATCGAACTATAATTCCCCGTTGCCCG-TCATAGC 443463 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||| ||||||| || |||| |||| |||| ||||||| |||||| Sbjct 443464 CATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAA 443508 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/108 (80%), Gaps = 9/108 (8%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT--AGAT---TGCTTATA--CTT 457 ||||||| ||||||||||| ||||||||||| ||| | || ||| |||| ||| Sbjct 443708 ATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATGCAAATATATGCGTATATCCTT 443767 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGC--ATATGACTACTGGCA 503 || ||||| ||||||||||||||||||| ||||||||||||||| Sbjct 443768 TCACTAGCATGACTTAATCTTTGAGACAAGCGTATATGACTACTGGCA 443815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510358494208