Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4 116 7e-24 seq10 105 1e-20 seq11 102 1e-19 >seq4 Length=1978248 Score = 116 bits (128), Expect = 7e-24 Identities = 187/267 (70%), Gaps = 29/267 (11%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || ||| | || |||| Sbjct 1855964 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCGTTTTCGCGTTTGAATA 1856023 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG---------GTTCTATTTTGTTGGTTTC 172 | ||||||||||||| | ||| | || | ||||| |||| || ||| Sbjct 1856024 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTTTTGTTCTTTTTTCTTATTTT- 1856082 Query 173 TAGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAG 231 || | || | |||||||||| ||| | ||||| | ||||||| |||||||| Sbjct 1856083 --GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAG 1856138 Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||| ||||| || |||| ||| ||||||||||| || || | || || Sbjct 1856139 GTGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTC 1856198 Query 292 CATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||||||| ||| Sbjct 1856199 CATTAATCA-AGAACGAAAGTTAAGGG 1856224 >seq10 Length=1051162 Score = 105 bits (116), Expect = 1e-20 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||| Sbjct 828696 GATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGAT 828755 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| ||||||||||| || || | || || ||||||||| |||| Sbjct 828756 TTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAAC 828814 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 828815 GAAAGTTAAGGG 828826 >seq11 Length=1061054 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 979604 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 979663 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 979664 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 979722 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 979723 AAGTTAAGGG 979732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198590592