Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 100 1e-18 seq11 95.1 5e-17 seq10 91.5 6e-16 >seq4 Length=1978248 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 1858292 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 1858351 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1858352 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1858411 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 1858412 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 1858450 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 1858898 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 1858957 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 1858958 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 1859017 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 1859018 ATCACGTTTAGGGGCGA 1859034 >seq11 Length=1061054 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 984464 GAGTAGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 984523 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || ||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 984524 TATTTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 984583 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 984584 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 984622 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 985099 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 985158 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 985159 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 985218 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 985219 ATCACGTTTAGGGGCGA 985235 >seq10 Length=1051162 Score = 91.5 bits (100), Expect = 6e-16 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 833104 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 833163 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | || |||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 833164 TATATGTAGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 833223 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| | || |||||| ||| | | |||| Sbjct 833224 AATAAGACTTAAATAATACCTGAAATCGTTAAGATGGAA 833262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996696700