Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10 113 9e-23 seq4 113 9e-23 seq11 111 3e-22 >seq10 Length=1051162 Score = 113 bits (124), Expect = 9e-23 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 201 AAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 || || | ||||||||| | || | | ||||| |||||||||| |||||||||||| Sbjct 829556 AAAGTGTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTA 829615 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||| ||||||||||||||||||||| | ||||||| | | ||| |||||||||| Sbjct 829616 ATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTG 829675 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 829676 CCCTTTGTA 829684 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 829375 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 829434 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 829435 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 829475 >seq4 Length=1978248 Score = 113 bits (124), Expect = 9e-23 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 201 AAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 || || | ||||||||| | || | | ||||| |||||||||| |||||||||||| Sbjct 1856954 AAAGTGTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTA 1857013 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||| ||||||||||||||||||||| | ||||||| | | ||| |||||||||| Sbjct 1857014 ATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTG 1857073 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1857074 CCCTTTGTA 1857082 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 1856773 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1856832 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 1856833 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 1856873 >seq11 Length=1061054 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 980486 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 980545 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 980546 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 980605 Query 328 A 328 | Sbjct 980606 A 980606 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 980291 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 980350 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 980351 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 980391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198541312