Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 257 5e-66 seq11 244 3e-62 seq12 219 1e-54 seq4 219 1e-54 >seq10 Length=1051162 Score = 257 bits (284), Expect = 5e-66 Identities = 367/505 (73%), Gaps = 14/505 (3%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 828312 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 828253 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 828252 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 828193 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 828192 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 828133 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 828132 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 828075 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 828074 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGATC 828017 Query 304 TTATCTAATAAATACACCCCTTCCGA--AGTCGGGGT--TTTTAGCATGTATTAGCTCTA 359 ||| | |||| ||||| ||||| ||| || || | || ||||||||| | Sbjct 828016 TTAACAAATACATACAATTACTCCGAGGAGTAAAAGTACTTAAAACAAGTATTAGCTACA 827957 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 || || || ||||||| | || ||| | | |||| || | ||||||| ||||||| Sbjct 827956 GATTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAATG 827900 Query 420 AGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||| ||||||||||| || || | || ||||||| || |||||||||||||||| Sbjct 827899 AGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCTT 827841 Query 479 TGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||| Sbjct 827840 TGAGACAAGCATATGACTACTGGCA 827816 >seq11 Length=1061054 Score = 244 bits (270), Expect = 3e-62 Identities = 365/506 (72%), Gaps = 18/506 (4%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 979215 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 979156 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 979155 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 979096 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 979095 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGG 979036 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 979035 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 978978 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 978977 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGGTC 978920 Query 304 TTATCTAATAAATAC-----ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||| | |||| ||| || |||| ||| || ||| || ||||||||| Sbjct 978919 TTAACAAATACGTACTAATTACTCCTT--AGAGTAAATGTACTTA-CAAGTATTAGCTAC 978863 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 || || || ||||||| | || ||| | | |||| || | ||||||| |||||| Sbjct 978862 AGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAAT 978806 Query 419 GAGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||| ||||||||||| || || | || ||||||| || ||||||||||||||| Sbjct 978805 GAGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCT 978747 Query 478 TTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||| Sbjct 978746 TTGAGACAAGCATATGACTACTGGCA 978721 >seq12 Length=891477 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 46539 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 46480 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 46479 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 46420 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 46419 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 46361 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 46360 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 46316 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 46191 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 46135 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 46134 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 46075 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 46074 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 46032 >seq4 Length=1978248 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 1855711 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 1855652 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1855651 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1855592 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 1855591 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 1855533 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1855532 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1855488 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 1855363 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 1855307 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 1855306 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 1855247 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1855246 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1855204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397673984