Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 5e-12 >seq11 Length=1061054 Score = 86.0 bits (94), Expect = 5e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 |||||| | | |||||||| || | ||||| | || | || ||| | |||||| Sbjct 551942 TGGACATTCATTAGGACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAA 551883 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 || |||||||| ||| | || || || | ||| | |||| | || || | || || Sbjct 551882 TAAATCAGGTACCCAAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATG 551823 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 |||||| | || || | || ||||| || || | |||||||||||| | || | || Sbjct 551822 ATTTTTTCTTAAATCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGC 551763 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || || || | | ||| || |||||||| || || || | ||| || || || || Sbjct 551762 AAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAAC 551703 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 | ||||| || || | || || ||| | ||||| || || Sbjct 551702 TCTTAACATTGGAACTAAACCATTTGATATACCATTAGTTCC 551661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567253814560