Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10 105 1e-20 seq11 102 1e-19 >seq10 Length=1045897 Score = 105 bits (116), Expect = 1e-20 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||| Sbjct 823959 GATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGAT 824018 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| ||||||||||| || || | || || ||||||||| |||| Sbjct 824019 TTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAAC 824077 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 824078 GAAAGTTAAGGG 824089 >seq11 Length=1045168 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 973050 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 973109 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 973110 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 973168 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 973169 AAGTTAAGGG 973178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198197056