Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12 100 1e-18 seq4 100 1e-18 seq11 95.1 5e-17 seq10 91.5 6e-16 >seq12 Length=931358 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 37160 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 37219 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 37220 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 37279 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 37280 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 37318 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 37767 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 37826 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 37827 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 37886 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 37887 ATCACGTTTAGGGGCGA 37903 >seq4 Length=1882022 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 1878326 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 1878385 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1878386 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1878445 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 1878446 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 1878484 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 1878933 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 1878992 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 1878993 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 1879052 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 1879053 ATCACGTTTAGGGGCGA 1879069 >seq11 Length=1045168 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 977561 GAGTAGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 977620 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || ||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 977621 TATTTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 977680 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 977681 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 977719 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 978196 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 978255 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 978256 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 978315 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 978316 ATCACGTTTAGGGGCGA 978332 >seq10 Length=1045897 Score = 91.5 bits (100), Expect = 6e-16 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 828585 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 828644 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | || |||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 828645 TATATGTAGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 828704 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| | || |||||| ||| | | |||| Sbjct 828705 AATAAGACTTAAATAATACCTGAAATCGTTAAGATGGAA 828743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995774350