Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq12 291 1e-76 seq4 291 1e-76 seq10 280 3e-73 seq11 196 8e-48 >seq12 Length=931358 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 40252 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 40193 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 40192 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 40133 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 40132 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 40073 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 40072 CTGTGGTAACTTTTCAGACACCTCTA 40047 >seq4 Length=1882022 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1881418 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1881359 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 1881358 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 1881299 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 1881298 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 1881239 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 1881238 CTGTGGTAACTTTTCAGACACCTCTA 1881213 >seq10 Length=1045897 Score = 280 bits (310), Expect = 3e-73 Identities = 185/205 (90%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 831906 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 831847 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 831846 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 831787 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||| ||||||||||| ||||||||| |||||||||| ||||||||| |||||||| Sbjct 831786 CATCGAAAGATCAAAAAGCTACGTCGCTAAAAACGCTTGGCAGCCACAAGCTAGTTATCC 831727 Query 211 CTGTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||||| | ||||||| Sbjct 831726 CTGTGGTAACTTTTCAGACACCTCT 831702 >seq11 Length=1045168 Score = 196 bits (216), Expect = 8e-48 Identities = 134/151 (89%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 ||||||||| ||||||||||||| || ||| || |||||| || |||||||||||| Sbjct 980699 CCCTATTAGCGGGTGAACAATCCGACACTTTGGGACTTCTGCGTCCCAATGATAGGAAGA 980640 Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||| Sbjct 980639 GCCGACATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGT 980580 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||||||||||||||||||| | |||||||| Sbjct 980579 TATCCCTGTGGTAACTTTTCAGACACCTCTA 980549 Score = 120 bits (132), Expect = 5e-25 Identities = 69/71 (97%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 981070 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 981011 Query 91 TTAGTGGGTGA 101 |||| |||||| Sbjct 981010 TTAGCGGGTGA 981000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398316832