Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002395.1_202014-08-27] 197 sequences; 22,031,682 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 257 5e-66 seq11 244 3e-62 seq12 150 5e-34 seq4 147 7e-33 >seq10 Length=1045897 Score = 257 bits (284), Expect = 5e-66 Identities = 367/505 (73%), Gaps = 14/505 (3%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 823575 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 823516 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 823515 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 823456 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 823455 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 823396 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 823395 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 823338 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 823337 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGATC 823280 Query 304 TTATCTAATAAATACACCCCTTCCGA--AGTCGGGGT--TTTTAGCATGTATTAGCTCTA 359 ||| | |||| ||||| ||||| ||| || || | || ||||||||| | Sbjct 823279 TTAACAAATACATACAATTACTCCGAGGAGTAAAAGTACTTAAAACAAGTATTAGCTACA 823220 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 || || || ||||||| | || ||| | | |||| || | ||||||| ||||||| Sbjct 823219 GATTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAATG 823163 Query 420 AGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||| ||||||||||| || || | || ||||||| || |||||||||||||||| Sbjct 823162 AGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCTT 823104 Query 479 TGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||| Sbjct 823103 TGAGACAAGCATATGACTACTGGCA 823079 >seq11 Length=1045168 Score = 244 bits (270), Expect = 3e-62 Identities = 365/506 (72%), Gaps = 18/506 (4%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 972661 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 972602 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 972601 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 972542 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 972541 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 972482 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 972481 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 972424 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 972423 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGGTC 972366 Query 304 TTATCTAATAAATAC-----ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||| | |||| ||| || |||| ||| || ||| || ||||||||| Sbjct 972365 TTAACAAATACGTACTAATTACTCCTT--AGAGTAAATGTACTTA-CAAGTATTAGCTAC 972309 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 || || || ||||||| | || ||| | | |||| || | ||||||| |||||| Sbjct 972308 AGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAAT 972252 Query 419 GAGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||| ||||||||||| || || | || ||||||| || ||||||||||||||| Sbjct 972251 GAGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCT 972193 Query 478 TTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||| Sbjct 972192 TTGAGACAAGCATATGACTACTGGCA 972167 >seq12 Length=931358 Score = 150 bits (166), Expect = 5e-34 Identities = 113/130 (87%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 34414 TTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCC 34355 Query 159 GTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217 |||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| ||||| Sbjct 34354 GTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAA 34296 Query 218 ATTTGAATGA 227 | | || ||| Sbjct 34295 ACTCGATTGA 34286 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 34161 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 34105 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 34104 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 34045 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 34044 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 34002 >seq4 Length=1882022 Score = 147 bits (162), Expect = 7e-33 Identities = 111/128 (87%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1876217 CCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGT 1876158 Query 161 TACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 |||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| |||||| Sbjct 1876157 TACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAAC 1876099 Query 220 TTGAATGA 227 | || ||| Sbjct 1876098 TCGATTGA 1876091 Score = 118 bits (130), Expect = 3e-24 Identities = 94/112 (84%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| |||| | | || | Sbjct 1875547 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCAT 1875488 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1875487 ATACTTTCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1875436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397024512