Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4355 114 2e-23 seq682 114 2e-23 seq479 114 2e-23 seq1333 95.1 2e-17 >seq4355 Length=13479 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 8039 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 8096 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 8097 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 8156 Query 119 TACC 122 |||| Sbjct 8157 TACC 8160 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 8235 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 8294 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 8295 CCTGTTGTTGCCTTAAACTTCCTTG 8319 >seq682 Length=4828 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 3131 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 3188 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 3189 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 3248 Query 119 TACC 122 |||| Sbjct 3249 TACC 3252 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 3333 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 3392 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 3393 CCTGTTGTTGCCTTAAACTTCCTTG 3417 >seq479 Length=15070 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 12231 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 12288 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 12289 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 12348 Query 119 TACC 122 |||| Sbjct 12349 TACC 12352 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 12427 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 12486 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 12487 CCTGTTGTTGCCTTAAACTTCCTTG 12511 >seq1333 Length=2988 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 74 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 133 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 134 CCTGTTGTTGCCTTAAACTTCCTTG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751958570205