Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq4355 84.2 1e-14 seq479 84.2 1e-14 seq682 80.6 1e-13 seq1333 77.0 2e-12 >seq4355 Length=13479 Score = 84.2 bits (92), Expect = 1e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 8844 CCTAGTCGGCATAGTTTATGGTTAAGATTACGACGGTATCTGATCGTCTTC 8894 >seq479 Length=15070 Score = 84.2 bits (92), Expect = 1e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 13036 CCTAGTCGGCATAGTTTATGGTTAAGATTACGACGGTATCTGATCGTCTTC 13086 >seq682 Length=4828 Score = 80.6 bits (88), Expect = 1e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 67 TAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 3954 TAGTCGGCATAGTTTATGGTTAAGATTACGACGGTATCTGATCGTCTTC 4002 >seq1333 Length=2988 Score = 77.0 bits (84), Expect = 2e-12 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGAC-GGTATCTGATCGTCTTC 115 |||||||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 683 CCTAGTCGGCATAGTTTATGGTTAAGATTACGACGGGTATCTGATCGTCTTC 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278385156930