Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq479 116 7e-24 seq4355 105 1e-20 seq1333 102 1e-19 seq682 102 1e-19 >seq479 Length=15070 Score = 116 bits (128), Expect = 7e-24 Identities = 187/267 (70%), Gaps = 29/267 (11%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || ||| | || |||| Sbjct 13350 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCGTTTTCGCGTTTGAATA 13291 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG---------GTTCTATTTTGTTGGTTTC 172 | ||||||||||||| | ||| | || | ||||| |||| || ||| Sbjct 13290 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTTTTGTTCTTTTTTCTTATTTT- 13232 Query 173 TAGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAG 231 || | || | |||||||||| ||| | ||||| | ||||||| |||||||| Sbjct 13231 --GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAG 13176 Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||| ||||| || |||| ||| ||||||||||| || || | || || Sbjct 13175 GTGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTC 13116 Query 292 CATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||||||| ||| Sbjct 13115 CATTAATCA-AGAACGAAAGTTAAGGG 13090 >seq4355 Length=13479 Score = 105 bits (116), Expect = 1e-20 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188 GATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||| Sbjct 9028 GATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGAT 8969 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| ||||||||||| || || | || || ||||||||| |||| Sbjct 8968 TTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAAC 8910 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 8909 GAAAGTTAAGGG 8898 >seq1333 Length=2988 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 866 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 807 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 806 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 748 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 747 AAGTTAAGGG 738 >seq682 Length=4828 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 4134 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 4075 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 4074 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 4016 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 4015 AAGTTAAGGG 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915147952576