Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3897 163 4e-38 >seq3897 Length=1146 Score = 163 bits (180), Expect = 4e-38 Identities = 187/247 (76%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| Sbjct 580 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAGA 638 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| || | ||| |||| ||| || | |||| | Sbjct 639 GTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGTTTCACTGCAACCCCCTTCGGCTCCA 698 Query 122 ----CACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 || | | |||||| | || ||| ||||||||||||||||||| |||||||| Sbjct 699 TGGGCATGCCACTTCACCTACCAAGGGCGTACCTTCTCCCGAAGTTACGGTACCATTTTG 758 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | | ||||| || ||| || |||| ||||||||| Sbjct 759 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTTTCATCCTGCCCACCTGTG 818 Query 236 TCGGTTT 242 ||||||| Sbjct 819 TCGGTTT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694361743551