Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3897 524 2e-146 seq1855 122 2e-25 seq523 122 2e-25 seq444 122 2e-25 seq4515 102 2e-19 seq3508 102 2e-19 seq3031 102 2e-19 seq2833 102 2e-19 seq1828 102 2e-19 seq1209 102 2e-19 seq3713 95.1 3e-17 seq3451 93.3 1e-16 >seq3897 Length=1146 Score = 524 bits (580), Expect = 2e-146 Identities = 362/407 (89%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 386 CGCGGGTACACTGCATCTTCACAGCAAGTTCAATTTCACTGAGTCCCGGGTGGAGACAGT 445 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 505 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 506 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGC 565 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 566 GCTGACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTT 625 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||||||||||||||||||||||||||||||||||||| || | || | ||| Sbjct 626 TCGTCTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGTTTCACTGCAACC 685 Query 301 GGCATGAGCTTACGGAGCAAGTC-CTTCACC-CTCACCGGCGCACCTTCTCCCGAAGTTA 358 | | ||| | ||| | | ||||||| || |||| ||||||||||||||||| Sbjct 686 CCCTTCGGCTCCATGGGCATGCCACTTCACCTACCAAGGGCGTACCTTCTCCCGAAGTTA 745 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCT 405 |||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 746 CGGTACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCT 792 >seq1855 Length=2312 Score = 122 bits (134), Expect = 2e-25 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | || |||||| | || | | ||||||| ||| Sbjct 1910 CTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCG 1969 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1970 TTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 2029 Query 131 TATTGTTACGGCCGCCGTTTAC 152 ||| | ||| |||||||||||| Sbjct 2030 TATAGATACAGCCGCCGTTTAC 2051 >seq523 Length=6439 Score = 122 bits (134), Expect = 2e-25 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | || |||||| | || | | ||||||| ||| Sbjct 6023 CTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCG 6082 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6083 TTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 6142 Query 131 TATTGTTACGGCCGCCGTTTAC 152 ||| | ||| |||||||||||| Sbjct 6143 TATAGATACAGCCGCCGTTTAC 6164 >seq444 Length=6911 Score = 122 bits (134), Expect = 2e-25 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| | || |||||| | || | | ||||||| ||| Sbjct 1952 CTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCG 2011 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2012 TTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 2071 Query 131 TATTGTTACGGCCGCCGTTTAC 152 ||| | ||| |||||||||||| Sbjct 2072 TATAGATACAGCCGCCGTTTAC 2093 >seq4515 Length=863 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 284 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 225 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 224 CGTTTATGATACAGCCGCCGTTTA 201 >seq3508 Length=728 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 325 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 266 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 265 CGTTTATGATACAGCCGCCGTTTA 242 >seq3031 Length=1683 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 730 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 671 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 670 CGTTTATGATACAGCCGCCGTTTA 647 >seq2833 Length=5093 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 2164 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 2105 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 2104 CGTTTATGATACAGCCGCCGTTTA 2081 >seq1828 Length=2054 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 1417 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 1358 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 1357 CGTTTATGATACAGCCGCCGTTTA 1334 >seq1209 Length=10963 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 2615 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 2556 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 2555 CGTTTATGATACAGCCGCCGTTTA 2532 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 8572 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 8513 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 8512 CGTTTATGATACAGCCGCCGTTTA 8489 >seq3713 Length=931 Score = 95.1 bits (104), Expect = 3e-17 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| ||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 734 TCGTTACACCGTTCA-GCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 676 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| || ||| ||||||||||| Sbjct 675 CGTTTATGATACAGCCGCCGTTTA 652 >seq3451 Length=1591 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 68 TCGTTACG-CCATTCGTGC-AGGTCGGA-ACTTACCCGACAAGGAATTTCGCTACCTTAG 124 ||||||| || ||| ||| ||| |||| |||||||||||||||||||| |||||||||| Sbjct 1540 TCGTTACCACCGTTCATGCCAGGACGGAGACTTACCCGACAAGGAATTTTGCTACCTTAG 1481 Query 125 GACCGTTATTGTTACGGCCGCCGTTTA 151 ||||||| || ||| ||||||||||| Sbjct 1480 GACCGTTTATGATACAGCCGCCGTTTA 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260728298304