Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3897 259 1e-66 seq1855 174 3e-41 seq523 174 3e-41 seq444 174 3e-41 seq4515 95.1 3e-17 seq3508 95.1 3e-17 seq3031 95.1 3e-17 seq2833 95.1 3e-17 seq1828 95.1 3e-17 seq1209 95.1 3e-17 seq3713 86.0 1e-14 seq3451 84.2 5e-14 >seq3897 Length=1146 Score = 259 bits (286), Expect = 1e-66 Identities = 221/273 (81%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | | | ||||||||| ||||| || ||||||||| Sbjct 392 TACACTGCATCTTCACAGCAAGTTCAATTTCACTGAGTCCCGGGTGGAGACAGTGTGGCC 451 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 452 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 511 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| |||| || || Sbjct 512 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTGAC 571 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| ||| ||| || || Sbjct 572 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTCGTCT 631 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 | ||||| |||||||||| ||||||||||| Sbjct 632 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 664 >seq1855 Length=2312 Score = 174 bits (192), Expect = 3e-41 Identities = 260/365 (71%), Gaps = 18/365 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 1912 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 1971 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1972 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 2031 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTA-----AGTTCACTGCTTCGATTGCTCTAACA 181 ||| ||| ||||||||||||| ||||| | || | || | | | ||| | Sbjct 2032 TAGATACAGCCGCCGTTTACTATAGCTTATATATATTTTATAATTTTAAAT--TATAA-A 2088 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 || || || | ||||| |||||| |||| |||||||| |||| ||| || Sbjct 2089 TATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTT 2148 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA-- 299 |||| | | |||||||||| ||||||||||||| ||| | || | ||| Sbjct 2149 AGCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAAC 2200 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || | | | | | ||||||||||||||||| | | | ||||||||||||||||| || | Sbjct 2201 TAAATAAGTATCTCTTCTCCCTAAGTTACGAGATAAATTTGCCGAGTTCCTTAAAAAAAA 2260 Query 360 TTCTC 364 || || Sbjct 2261 TTATC 2265 >seq523 Length=6439 Score = 174 bits (192), Expect = 3e-41 Identities = 260/365 (71%), Gaps = 18/365 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 6025 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 6084 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6085 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 6144 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTA-----AGTTCACTGCTTCGATTGCTCTAACA 181 ||| ||| ||||||||||||| ||||| | || | || | | | ||| | Sbjct 6145 TAGATACAGCCGCCGTTTACTATAGCTTATATATATTTTATAATTTTAAAT--TATAA-A 6201 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 || || || | ||||| |||||| |||| |||||||| |||| ||| || Sbjct 6202 TATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTT 6261 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA-- 299 |||| | | |||||||||| ||||||||||||| ||| | || | ||| Sbjct 6262 AGCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAAC 6313 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || | | | | | ||||||||||||||||| | | | ||||||||||||||||| || | Sbjct 6314 TAAATAAGTATCTCTTCTCCCTAAGTTACGAGATAAATTTGCCGAGTTCCTTAAAAAAAA 6373 Query 360 TTCTC 364 || || Sbjct 6374 TTATC 6378 >seq444 Length=6911 Score = 174 bits (192), Expect = 3e-41 Identities = 260/365 (71%), Gaps = 18/365 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 1954 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 2013 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2014 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 2073 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTA-----AGTTCACTGCTTCGATTGCTCTAACA 181 ||| ||| ||||||||||||| ||||| | || | || | | | ||| | Sbjct 2074 TAGATACAGCCGCCGTTTACTATAGCTTATATATATTTTATAATTTTAAAT--TATAA-A 2130 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 || || || | ||||| |||||| |||| |||||||| |||| ||| || Sbjct 2131 TATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTT 2190 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA-- 299 |||| | | |||||||||| ||||||||||||| ||| | || | ||| Sbjct 2191 AGCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAAC 2242 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || | | | | | ||||||||||||||||| | | | ||||||||||||||||| || | Sbjct 2243 TAAATAAGTATCTCTTCTCCCTAAGTTACGAGATAAATTTGCCGAGTTCCTTAAAAAAAA 2302 Query 360 TTCTC 364 || || Sbjct 2303 TTATC 2307 >seq4515 Length=863 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 287 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 228 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 227 GACCGTTTATGATACAGCCGCCGTTTA 201 >seq3508 Length=728 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 328 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 269 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 268 GACCGTTTATGATACAGCCGCCGTTTA 242 >seq3031 Length=1683 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 733 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 674 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 673 GACCGTTTATGATACAGCCGCCGTTTA 647 >seq2833 Length=5093 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 2167 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 2108 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 2107 GACCGTTTATGATACAGCCGCCGTTTA 2081 >seq1828 Length=2054 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 1420 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 1361 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 1360 GACCGTTTATGATACAGCCGCCGTTTA 1334 >seq1209 Length=10963 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 2618 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 2559 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 2558 GACCGTTTATGATACAGCCGCCGTTTA 2532 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 8575 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 8516 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 8515 GACCGTTTATGATACAGCCGCCGTTTA 8489 >seq3713 Length=931 Score = 86.0 bits (94), Expect = 1e-14 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| || || |||| |||||||||||||||||| |||||||||| Sbjct 737 AAGTCGTTACACCGTTCA-GCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 679 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 678 GACCGTTTATGATACAGCCGCCGTTTA 652 >seq3451 Length=1591 Score = 84.2 bits (92), Expect = 5e-14 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 59 AAATCGTTACG-CCTTTCGTGCG-GGTCGGA-ACTTACCCGACAAGGAATTTCGCTACCT 115 || ||||||| || ||| ||| || |||| |||||||||||||||||||| ||||||| Sbjct 1543 AAGTCGTTACCACCGTTCATGCCAGGACGGAGACTTACCCGACAAGGAATTTTGCTACCT 1484 Query 116 TAGGACCGTTATAGTTACGGCCGCCGTTTA 145 |||||||||| | ||| ||||||||||| Sbjct 1483 TAGGACCGTTTATGATACAGCCGCCGTTTA 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062339581312