Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3814 538 1e-150 seq444 91.5 4e-16 >seq3814 Length=1146 Score = 538 bits (596), Expect = 1e-150 Identities = 420/497 (85%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 349 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 408 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||| || || ||| Sbjct 409 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATGCTTGGAATCCTG 468 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| || | || |||||| | || || ||||||| ||||||| ||||||||| Sbjct 469 CAGAGATGCGGGAGTGCC-TTCGGGAGCCA-AGACACAGGTGCTGCATGGCTGTCGTCAG 526 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 527 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCCTTAGTTGC 586 Query 241 CATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || | || | ||| |||||||| |||||||||||| |||||||||||||||||||| Sbjct 587 CAGCGGTTCGGCCGGGAACTCTAAGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGGA 646 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| |||||||| |||||||| ||||||||||||||||||||||| | || Sbjct 647 TGACGTCAAGTCATCATGGCCCTTATGGCCAGGGCTACACACGTGCTACAATGGCCGGTA 706 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || |||| ||| || ||||||||| ||| ||||||| |||| | ||| ||| |||||| Sbjct 707 CAGAGGGTAGCCAAGCCGCGAGGTGGAGCCAATCCCAGAAAGCCGGTCTTAGTCCGGATT 766 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | |||||||||||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 767 GCAGTCTGCAACTCGACTGCATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCATGCCG 826 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 827 CGGTGAATACGTTCCCG 843 >seq444 Length=6911 Score = 91.5 bits (100), Expect = 4e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||| ||||||||||||||||| | ||||| |||||| ||||||| | Sbjct 5339 CGCAAGAACGAAATTCAAAGGAATTGACGGGAGCTTATACAAGTGGTGGAACATGTGGCT 5398 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||| ||||| ||| |||||||||||| || ||| Sbjct 5399 TAATTCGATGCAACACGATAAACCTTACCAAAATTTAACA 5438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503914467520