Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3897 172 1e-40 >seq3897 Length=1146 Score = 172 bits (190), Expect = 1e-40 Identities = 212/283 (75%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATT-GGATTTCTAACC--GGACGACGTAT 100 ||||||| ||| |||| |||| || || ||| ||| |||||||| || | ||| Sbjct 278 GGAGCCGACCTTGAAATACCACCC-TGGTGAATTTGGAGTTCTAACCCAGGTC--CGTG- 223 Query 101 AACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAG 160 | ||| ||||| ||| | ||| |||||||||||||||||| ||||| |||| | Sbjct 222 ATCCGGATCGGGGACCGTGCATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCMAAAGCG 163 Query 161 TAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGG 220 ||||||||| || | ||| | | |||||| ||| ||||| || || | |||| || || Sbjct 162 TAACGGAGGAGCACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCAAAGAGTGTAAGGG 103 Query 221 CAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATG 280 |||||| | | |||||||||| || | |||| |||||| |||||||| || | || || Sbjct 102 CAAAAGCGCGCTTGACTGCGAGACGAACGAGTCGAGCAGGTACGAAAGTAGGTCCTAGTG 43 Query 281 ATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 |||||| ||| ||| | |||| |||| |||||| ||||||||| Sbjct 42 ATCCGGTGGTTCTGTA-GGAAGGGCCATCGCTCAACGGATAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982344130912