Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq3897 143 3e-32 seq1855 96.9 4e-18 seq523 96.9 4e-18 seq444 96.9 4e-18 seq4515 82.4 8e-14 seq3508 82.4 8e-14 seq3031 82.4 8e-14 seq2833 82.4 8e-14 seq1828 82.4 8e-14 seq1209 82.4 8e-14 seq3451 75.2 1e-11 seq3713 73.4 4e-11 >seq3897 Length=1146 Score = 143 bits (158), Expect = 3e-32 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 367 CGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTCACAGCAAGTTCAATTTCACTG 426 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 427 AGTCCCGGGTGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 486 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 487 GACAAGGAATTTCGCTACCTTAGGACCGTTA 517 >seq1855 Length=2312 Score = 96.9 bits (106), Expect = 4e-18 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | |||||| | || | || |||||| Sbjct 1907 AATCTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAG 1966 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1967 TCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 2026 Query 169 CGTTA 173 ||||| Sbjct 2027 CGTTA 2031 >seq523 Length=6439 Score = 96.9 bits (106), Expect = 4e-18 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | |||||| | || | || |||||| Sbjct 6020 AATCTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAG 6079 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 6080 TCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 6139 Query 169 CGTTA 173 ||||| Sbjct 6140 CGTTA 6144 >seq444 Length=6911 Score = 96.9 bits (106), Expect = 4e-18 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | |||||| | || | || |||||| Sbjct 1949 AATCTGCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAG 2008 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2009 TCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 2068 Query 169 CGTTA 173 ||||| Sbjct 2069 CGTTA 2073 >seq4515 Length=863 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 280 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 221 >seq3508 Length=728 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 321 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 262 >seq3031 Length=1683 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 726 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 667 >seq2833 Length=5093 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 2160 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 2101 >seq1828 Length=2054 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 1413 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 1354 >seq1209 Length=10963 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 2611 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 2552 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 8568 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 8509 >seq3451 Length=1591 Score = 75.2 bits (82), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 115 CACCATTCGTGC-AGGTCGGA-ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||| ||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1533 CACCGTTCATGCCAGGACGGAGACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 1474 >seq3713 Length=931 Score = 73.4 bits (80), Expect = 4e-11 Identities = 53/60 (88%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| ||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 730 TACACCGTTCA-GCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169853213