Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3814 161 2e-37 >seq3814 Length=1146 Score = 161 bits (178), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAG-CGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTG 59 ||||||||||||| |||||| ||||||| |||||| | |||||||||||||||||| Sbjct 232 CCCACGCTTTCGCACCTCAGGCGTCAGTGTTGGTCCAGGTAGCCGCCTTCGCCACTGGTG 173 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||| | || |||||||||||||| ||||||| | |||||| | ||||| | || Sbjct 172 TTCCTTCCGATCTCTACGCATTTCACTGCTACACCGGAAATTCCACTACCCTCTACCACA 113 Query 120 CTCAAGAAAAACA-GTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 ||| || ||| || || ||||||| |||| |||||| | ||||||||| || Sbjct 112 CTCGAGCCTGACAGGTATCCAATGCAGTTCCCAGGTTAAGCCCAGGGCTTTCACATCAGA 53 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCT 229 ||| | |||||||| ||| |||||| |||| ||| |||| ||||||| Sbjct 52 CTTATCAAACCGCCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828754339077