Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq523 114 2e-23 seq444 114 2e-23 seq1855 113 7e-23 seq3496 107 3e-21 >seq523 Length=6439 Score = 114 bits (126), Expect = 2e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||| Sbjct 5466 GATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGC 5525 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | |||||| || |||| | ||| |||||| || ||||||||||| Sbjct 5526 GAACAGACTTACCCTTAAAACATACTACTGCCTTAGGATGCGATAAGCCGACATCG 5581 >seq444 Length=6911 Score = 114 bits (126), Expect = 2e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||| Sbjct 1395 GATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGC 1454 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | |||||| || |||| | ||| |||||| || ||||||||||| Sbjct 1455 GAACAGACTTACCCTTAAAACATACTACTGCCTTAGGATGCGATAAGCCGACATCG 1510 >seq1855 Length=2312 Score = 113 bits (124), Expect = 7e-23 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| |||| Sbjct 1354 ATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGCG 1413 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| | |||||| || |||| | ||| |||||| || ||||||||||| Sbjct 1414 AACAGACTTACCCTTAAAACATACTACTGCCTTAGGATGCGATAAGCCGACATCG 1468 >seq3496 Length=868 Score = 107 bits (118), Expect = 3e-21 Identities = 95/116 (82%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||| Sbjct 666 GATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGC 725 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | |||||| || |||| | ||| |||||| || ||||||||||| Sbjct 726 GAACAGACTTACCCTT-AAACATACTACTGCCTTAGGATGCGA-TAGCCGACATCG 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780756983532