Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq479 462 7e-128 seq1378 455 1e-125 seq4355 416 9e-114 >seq479 Length=15070 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 8447 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 8506 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 8507 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 8566 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 8567 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 8626 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8627 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 8686 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8687 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 8746 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 8747 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 8806 Query 535 CACTT 539 || || Sbjct 8807 CATTT 8811 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 8227 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 8286 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 8287 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 8333 >seq1378 Length=8298 Score = 455 bits (504), Expect = 1e-125 Identities = 286/307 (93%), Gaps = 1/307 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 4745 CTCCCACTTATTCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 4804 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4805 CAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 4864 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4865 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 4924 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4925 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGA 4984 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| ||||||||||| ||||||||||||||||||| ||| || || | || Sbjct 4985 TTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATACCA 5044 Query 537 CTTTCTG 543 |||||| Sbjct 5045 -TTTCTG 5050 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 4462 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 4521 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 4522 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 4568 >seq4355 Length=13479 Score = 416 bits (460), Expect = 9e-114 Identities = 312/367 (85%), Gaps = 16/367 (4%) Strand=Plus/Plus Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------CGG 236 ||||||| ||| ||| |||||||||||||||| ||| ||| | | Sbjct 1779 AGTAAAACAACATTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTCTG 1838 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 1839 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 1898 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1899 CAGGGTCTTCTTTCCCCGCTGATTTAGCCAAGCCCGATCCCTTGGCTGTGGTTTCGCTAG 1958 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || | | ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 1959 ATCGCAAGTAGGGACAGTGAGAATCTCGTTAATCCATTCATGCACGTCACTAATT--ATG 2016 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct 2017 ACGAGACATTTGGCTACCTTAAGAGAGTCATAGTTACCCCCGCCGTTTACCTGTGCTTTA 2076 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| |||||||||| |||||||||||||||||||||| ||||| | || Sbjct 2077 TTGAATTTCATCAAGTTGACATTCATGGCACTGGGCAGAAATCACATTGTGTCAATACCA 2136 Query 537 CTTTCTG 543 |||||| Sbjct 2137 -TTTCTG 2142 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| || ||||| Sbjct 1555 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTATGTTATT 1614 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 1615 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCTGGCTATGTC 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635107006176