Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3897 369 1e-99 seq1855 118 4e-24 seq523 118 4e-24 seq444 118 4e-24 seq4515 91.5 5e-16 seq3508 91.5 5e-16 seq3031 91.5 5e-16 seq2833 91.5 5e-16 seq1828 91.5 5e-16 seq1209 91.5 5e-16 seq3713 82.4 3e-13 seq3451 80.6 9e-13 >seq3897 Length=1146 Score = 369 bits (408), Expect = 1e-99 Identities = 421/565 (75%), Gaps = 12/565 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||| || ||||||||||||||| | ||| ||| ||||||||| | ||||| || Sbjct 68 TCGACTCGTTCGTCTCGCAGTCAAGCGCGCTTTTGCCCTTACACTCTTTGCGTGATTTCC 127 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | || |||||||||| ||| ||||| | ||||||||| Sbjct 128 GACCACGCTGAGCGCACCTTCGTGCTCCTCCGTTACGCTTTKGGAGGAGA-CCGCCCCAG 186 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| |||| |||||| | || ||||| || || ||||||| |||| Sbjct 187 TCAAACTACCCACCATGCACGGTCCCCGATCCGGATCACGGACCTGGGTTAGAACTCCAA 246 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 ||| |||||||||||| || |||||| ||| |||| || || || Sbjct 247 ATTCACCAGGGTGGTATTTCAAGGTCGGCTCCACCCGAACTGGCGTCCGGGCTTCTCAGC 306 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||||||| | | || ||| | | |||||||||| ||||| | Sbjct 307 CTCCCACCTATCCTACACAAGTCAATTCAAAGTCCAGTGCAAAGCTATAGTAAAGGTTCA 366 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||||| | | ||||||| || | | ||||||||| | Sbjct 367 CGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTCACAGCAAGTTCAATTTCACTG 426 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | | ||| ||||||| || |||||||||||||||||||||||||||||||||| Sbjct 427 AGTCCCGGGTGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 486 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 487 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTC 546 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 || | || || | || ||| || | |||||||||| |||||| Sbjct 547 GATCAAGAGCTTCGC----------TTGCGCTGACCCCATCAATTAACCTTCCGGCACCG 596 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||| || ||||| ||| Sbjct 597 GGCAGGCGTCACACCCTATACGTCG 621 >seq1855 Length=2312 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 || |||||||| ||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 1950 TTAAGACAGCATTTAAGTCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAA 2009 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 2010 TTTCGCTACCTTTGGACCGTTATAGATACAGCCGCCGTTTACT 2052 >seq523 Length=6439 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 || |||||||| ||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 6063 TTAAGACAGCATTTAAGTCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAA 6122 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 6123 TTTCGCTACCTTTGGACCGTTATAGATACAGCCGCCGTTTACT 6165 >seq444 Length=6911 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 || |||||||| ||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 1992 TTAAGACAGCATTTAAGTCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAA 2051 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 2052 TTTCGCTACCTTTGGACCGTTATAGATACAGCCGCCGTTTACT 2094 >seq4515 Length=863 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 290 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 231 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 230 TAGGACCGTTTATGATACAGCCGCCGTTTA 201 >seq3508 Length=728 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 331 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 272 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 271 TAGGACCGTTTATGATACAGCCGCCGTTTA 242 >seq3031 Length=1683 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 736 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 677 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 676 TAGGACCGTTTATGATACAGCCGCCGTTTA 647 >seq2833 Length=5093 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 2170 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 2111 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 2110 TAGGACCGTTTATGATACAGCCGCCGTTTA 2081 >seq1828 Length=2054 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 1423 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 1364 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 1363 TAGGACCGTTTATGATACAGCCGCCGTTTA 1334 >seq1209 Length=10963 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 2621 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 2562 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 2561 TAGGACCGTTTATGATACAGCCGCCGTTTA 2532 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 8578 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 8519 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 8518 TAGGACCGTTTATGATACAGCCGCCGTTTA 8489 >seq3713 Length=931 Score = 82.4 bits (90), Expect = 3e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| ||||| |||| |||||||||||||||||| ||||||| Sbjct 740 GGGAAGTCGTTACACCGTTCA-GCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 682 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| ||| | ||| |||||||||| Sbjct 681 TAGGACCGTTTATGATACAGCCGCCGTTTA 652 >seq3451 Length=1591 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/93 (82%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACG-CCATTCGTGC-AGGTCGGA-ACTTACCCGACAAGGAATTTCGCTA 436 ||| ||||||||| || ||| ||| ||| |||| |||||||||||||||||||| |||| Sbjct 1546 GGGAAGTCGTTACCACCGTTCATGCCAGGACGGAGACTTACCCGACAAGGAATTTTGCTA 1487 Query 437 CCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||||||| ||| | ||| |||||||||| Sbjct 1486 CCTTAGGACCGTTTATGATACAGCCGCCGTTTA 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702303184512