Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4355 257 5e-66 seq1333 244 3e-62 seq479 219 1e-54 seq682 215 2e-53 >seq4355 Length=13479 Score = 257 bits (284), Expect = 5e-66 Identities = 367/505 (73%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 9412 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 9471 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 9472 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 9531 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 9532 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 9591 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 9592 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 9649 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 9650 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGATC 9707 Query 304 TTATCTAATAAATACACCCCTTCCGA--AGTCGGGGT--TTTTAGCATGTATTAGCTCTA 359 ||| | |||| ||||| ||||| ||| || || | || ||||||||| | Sbjct 9708 TTAACAAATACATACAATTACTCCGAGGAGTAAAAGTACTTAAAACAAGTATTAGCTACA 9767 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 || || || ||||||| | || ||| | | |||| || | ||||||| ||||||| Sbjct 9768 GATTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAATG 9824 Query 420 AGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||| ||||||||||| || || | || ||||||| || |||||||||||||||| Sbjct 9825 AGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCTT 9883 Query 479 TGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||| Sbjct 9884 TGAGACAAGCATATGACTACTGGCA 9908 >seq1333 Length=2988 Score = 244 bits (270), Expect = 3e-62 Identities = 365/506 (72%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 1255 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 1314 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1315 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1374 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 1375 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGG 1434 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 1435 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAAT-AT 1492 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTT 303 | | | ||| | || |||| ||| || | | | | || | Sbjct 1493 TACATTATGTGTCGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGGTC 1550 Query 304 TTATCTAATAAATAC-----ACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||| | |||| ||| || |||| ||| || ||| || ||||||||| Sbjct 1551 TTAACAAATACGTACTAATTACTCCTT--AGAGTAAATGTACTTA-CAAGTATTAGCTAC 1607 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 || || || ||||||| | || ||| | | |||| || | ||||||| |||||| Sbjct 1608 AGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAAT 1664 Query 419 GAGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||| ||||||||||| || || | || ||||||| || ||||||||||||||| Sbjct 1665 GAGCCGTTCGCAGTTTCTACAATA-ATTGTGTATATACTTTCACTTGCATGGCTTAATCT 1723 Query 478 TTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||| Sbjct 1724 TTGAGACAAGCATATGACTACTGGCA 1749 >seq479 Length=15070 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 13603 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 13662 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 13663 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 13722 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 13723 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 13781 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 13782 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 13826 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 13951 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 14007 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 14008 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 14067 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 14068 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 14110 >seq682 Length=4828 Score = 215 bits (238), Expect = 2e-53 Identities = 183/224 (82%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 4523 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 4582 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 4583 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 4642 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 4643 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGG 4702 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 4703 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 4746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510314103552