Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq2106 192 2e-44 >seq2106 Length=2500 Score = 192 bits (212), Expect = 2e-44 Identities = 357/515 (69%), Gaps = 13/515 (3%) Strand=Plus/Plus Query 17962 AGCCGGAGGACGCCGTGGCTTACGTCCAGCAAAAGGGATTCCAGATCAGCTGGAACTGGT 18021 |||| ||| ||| | || ||| ||||||| ||||| | | || | | |||||||||| Sbjct 1702 AGCCCAAGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGC 1761 Query 18022 ATGAGGTCCGCGACGCCGCCCACGCCCAGGCGTTCACCGTGGCCAAGGTGGCGCGCATGG 18081 | ||| | | |||| |||||||| | ||| || ||| | || ||| |||||| || Sbjct 1762 AGGAGATGCTGGACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG- 1820 Query 18082 ACGTGCTGCAGGACATCCGCGATGCGGTGGAGGCCAGCCTGGAGAAAGGGTGGAGCCTGG 18141 ||||| |||||||||| || |||| | || | | || | || | || Sbjct 1821 ACGTGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCA 1880 Query 18142 GCCAATTCAAGAAGAACCTGACGCCGGTCCTGCAGGCAAGGGGATGGTGGGGCAAGCAGG 18201 | ||| | || ||| ||| ||| ||||| || | ||| ||||||||||| ||| Sbjct 1881 AGGACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGA 1940 Query 18202 TCATCGTGGATT-CGCAGGGCGGTGCCGAGATGGCCCAGCTGGGCAGCCCACGCCGGCTG 18260 ||||||| || ||| ||| | ||||| | |||| ||||||||||||| | |||||| Sbjct 1941 TCATCGTTGACGGCGCCGGGAW-TSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTG 1999 Query 18261 GAGACCATCTATCGGACGAACATACAGAGCGCCATGATGGCGGCCCGCTACAAGCAGATG 18320 | || ||||| ||||||||| | || |||| | |||||||| ||| | ||| Sbjct 2000 GCTACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCA--AGA-A 2056 Query 18321 CTGGCCAATGTC-CG--CTTCCGGCCCTACTGGCAGTACATCGCCGTGATGGACGGTCGC 18377 ||||| | | | || | || ||||| ||||| ||| |||| ||| ||||||| ||| Sbjct 2057 ATGGCCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGC 2116 Query 18378 ACGCGCCCGTCGCACGCGGCGCTGCATGGCCGGGTGTACCGCTATGACGATCCCATTTGG 18437 || || || ||| ||| || | ||||| |||| |||| ||||||||||||| ||| Sbjct 2117 ACCCGGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG 2176 Query 18438 --CAGTACCTGTTTCCGCCCAACGGTTACAACTGC 18470 || | ||| |||||||| || | ||||||| Sbjct 2177 AACACGATCTG--GCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134080544510282