Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq402 241 5e-61 seq489 215 2e-53 >seq402 Length=8548 Score = 241 bits (266), Expect = 5e-61 Identities = 249/322 (77%), Gaps = 23/322 (7%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||| ||| || |||| || | | | ||||||||| |||||||||||||||||||||| Sbjct 4824 AGGACTCTGACGAAATGCTTCTCATCACCCCGTCTTGAAACACGGACCAAGGAGTCTAAC 4883 Query 440 ATCTATGCGAGTGTTTGGGTGTCAA-ACCCGTGCGCGTAATGAAAGTGAACGG------- 491 || | |||||||| | ||| ||||| ||| ||||| ||| || || || || Sbjct 4884 ATGTGTGCGAGTGCTCGGG-GTCAACCCCCCAGCGCGAAATAAACGTAAAGGGGAATTTA 4942 Query 492 -------AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG---GA 541 |||| ||| || | | ||||||| ||||||||| | |||| || || || Sbjct 4943 TTCCCTTAGGTAGGATCC--TTA-GGTGCACTATCGACCGACCATGAT-CCTCCGGGAGA 4998 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 | ||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 4999 AAGGTTTGAGTGTGAGCATACATGTTGGGACCCGAAAGATGGTGAACTATGCTTGAGTAG 5058 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || |||||||| ||||||||||||||||| ||||||| |||| ||||||||| ||||| Sbjct 5059 GGCGAAGCCAGGGGAAACTCTGGTGGAGGTCCGCAGCGATTCTAACGTGCAAATTGATCG 5118 Query 662 TCAAATTTGGGTATAGGGGCGA 683 || || |||||||||||||||| Sbjct 5119 TCGAACTTGGGTATAGGGGCGA 5140 Score = 188 bits (208), Expect = 3e-45 Identities = 148/177 (84%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||||||||||| |||||| |||| |||| |||||||| | ||||||| Sbjct 4545 TTCTACGAGTCGTGTTGTTTGGGACTGCAGCACTAAGTGGGTGGTAAATTCCATCTAAAG 4604 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| ||||||||||||| ||||||| |||| |||||||| |||| ||| Sbjct 4605 CTAAATATTGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACT 4664 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || || |||||||| ||||| |||| || | | || ||| Sbjct 4665 TTGAAAAGAGAGTTAAATAGTACCTGAAATTGCTGAAATGGAACCGATGGGAAGCAG 4721 >seq489 Length=7632 Score = 215 bits (238), Expect = 2e-53 Identities = 223/291 (77%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 393 AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTG 452 ||||||| || || ||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 4029 AATGGTTCTATTCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATATGTGCGAGTC 4088 Query 453 TTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTG 512 ||||| ||||| | ||| | |||||| || | ||||| | || Sbjct 4089 CACGGGTGGTAAACCTGCTGGCGCAGTGAAAGCGACTGC---TGGGATCTT-------TG 4138 Query 513 CACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGAC 572 ||||| | ||||| | || || || | |||||||| ||||||| ||||| |||| Sbjct 4139 CACCAGCAACCGACCA--ATCAATTGAGAGAGGTTTGAGTATGAGCATATCTGTTAGGAC 4196 Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||||||||||||||||||| |||| || ||| |||||||||| |||||||| Sbjct 4197 CCGAAAGATGGTGAACTATGCCTGAGAAGGGCAAACTCAGGGGAAACTCTGATGGAGGCT 4256 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| | ||| ||||||||||| |||||| | |||||||||||||||| Sbjct 4257 CGTAGCGATACTGACGTGCAAATCGTTCGTCATACTTGGGTATAGGGGCGA 4307 Score = 159 bits (176), Expect = 1e-36 Identities = 147/185 (79%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 ||||| | |||||| ||| | || | || ||| || |||| |||||||||| ||| | Sbjct 3587 CCTTCTAAGAGTCGCGTTCCTCGGAATTGGAGCGTAAATTGGGTGGTAAATTTCATCTCA 3646 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 ||||||||||||| |||||||||||| ||||||| ||| ||||||||||||| | Sbjct 3647 AGCTAAATATTGGTTCGAGACCGATAGCAAACAAGTACCATGAGGGAAAGATGAAAAGGA 3706 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGA 211 ||||| |||||||||| ||||| | |||||||| ||||||||||||| || |||||| Sbjct 3707 CTTTGAAAAGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAGGGAAGCGAATGGAACCAGT 3765 Query 212 CTTGC 216 |||| Sbjct 3766 GTTGC 3770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079644423350