Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2185 205 1e-50 seq5356 179 5e-43 seq5976 149 9e-34 seq5532 149 9e-34 seq1552 149 9e-34 seq1751 141 1e-31 seq8185 127 3e-27 seq6305 109 8e-22 seq219 84.2 3e-14 >seq2185 Length=2392 Score = 205 bits (226), Expect = 1e-50 Identities = 197/251 (78%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| |||||||| || |||| | || || |||| Sbjct 19 TTAACCTTCCGGCACCGGGCAGGTGTCACACCGTATACGTCCACTTTC-GTGTTAGCACA 77 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||| | || ||| || ||||| |||||| | ||| | Sbjct 78 GTGCTGTGTTTTTAATAAACAGTCCCAGCCATCTGGTCACTGCGGCCACCATCTGCTTAC 137 Query 122 CACGTC----GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | || |||||| | ||||||| ||||||||||||||||||| | |||||||| Sbjct 138 CTCGCAAGGAGTTCACAAACAGTGGCGTACCTTCTCCCGAAGTTACGGTACTATTTTGCC 197 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| ||| |||| | | | ||||||||||||||||||||||||||||||||| Sbjct 198 GAGTTCCTTCACCCGGGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCACCTGTGTC 257 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 258 GGTTTGGGGTA 268 >seq5356 Length=1268 Score = 179 bits (198), Expect = 5e-43 Identities = 189/248 (76%), Gaps = 13/248 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 420 TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGA 478 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || ||| ||| ||| ||||| Sbjct 479 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTGCCACCCCCACC------- 531 Query 122 CACGTCGTT-CACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | ||| | || | || |||||||| |||| ||||||| ||||||||||| Sbjct 532 ----TAGTTGCCTAAGTGGAGGTCTCCCTTCTCGCGAACTTACGGGAGCATTTTGCCGAG 587 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| ||||||| |||||||||||||||| Sbjct 588 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGACCACCTGTGTCGGT 647 Query 241 TTACGGTA 248 || |||| Sbjct 648 TTGGGGTA 655 >seq5976 Length=1176 Score = 149 bits (164), Expect = 9e-34 Identities = 183/249 (73%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | ||||||| Sbjct 420 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTGTTAGCCACTTCGCAG 479 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||| ||||||||||||||||||||| ||| ||| ||| ||| || || ||| Sbjct 480 AGCCCTATGTTTTTAGTAAACAGTCGCTACCCCCTAGTCTGTGC--CCCCCGCCA----- 532 Query 121 ACACGTCGTTCACCAGCAGTGGCAC-CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | ||| ||| | || | ||| ||||||||||||| || |||||||| Sbjct 533 ----ATGGTTGCCCATTAACGGGGCTTGCTTATCCCGAAGTTACGCAAGCAATTTGCCGA 588 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||| ||||||| | |||||||||| || Sbjct 589 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTTGG 648 Query 240 TTTACGGTA 248 |||| |||| Sbjct 649 TTTAGGGTA 657 >seq5532 Length=1239 Score = 149 bits (164), Expect = 9e-34 Identities = 185/249 (74%), Gaps = 16/249 (6%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 839 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGA 781 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||||||||||||||| ||| || ||| ||| || || | Sbjct 780 GCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTGC--------CC--CTGGA 731 Query 122 CACGTCGTTCACCAGCAGT--GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || ||| | || | | ||| ||| ||||| |||| ||||||| | |||||||| Sbjct 730 CA--TCGGTTGCCCGACGCCAGGCTCCC-TTCTCGCGAACTTACGGGAGTAATTTGCCGA 674 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||| Sbjct 673 GTTCCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTATGCTCTACCAGTCCACCTGTGTCGG 614 Query 240 TTTACGGTA 248 ||| |||| Sbjct 613 TTTGGGGTA 605 >seq1552 Length=3150 Score = 149 bits (164), Expect = 9e-34 Identities = 184/247 (74%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 369 TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGA 427 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||| ||||||||||| ||| || | | ||| | ||||| | Sbjct 428 GCCCTGTGTTTTTAATAAACAGTCGCCACCCCCTGGTTTGTGC------CCCCAGCCC-- 479 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | | | | | ||| | ||||||| |||| |||||| | |||||||||| | Sbjct 480 CTAGTTGCCTAGGAACCG-GGC-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 537 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||||| Sbjct 538 TCCTTCAACATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGGTT 597 Query 242 TACGGTA 248 || |||| Sbjct 598 TAGGGTA 604 >seq1751 Length=2850 Score = 141 bits (156), Expect = 1e-31 Identities = 183/251 (73%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| || ||||| || ||| | | || ||| Sbjct 1369 TTAACCTTCCGGCACCGGGCAGGTGTCACACCCTATACGTCCTCTTGC-GAGTTTGCAGA 1427 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || || ||||||| | ||| | Sbjct 1428 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTCACTGCGACTCTCTATTGCTTAC 1487 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| ||||| | | || ||||||||||||||||||| | |||||||| Sbjct 1488 GGAGCAAGTCCTTCACAACAAAGAGCGTACCTTCTCCCGAAGTTACGGTACTATTTTGCC 1547 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| | | ||||| | | | |||||| |||| ||||||||||||||||||||| Sbjct 1548 TAGTTCCTTCAGCCGAGTTCTCTCAAGCGCCTTGGTATGCTCTACCTGACCACCTGTGTC 1607 Query 238 GGTTTACGGTA 248 |||||| |||| Sbjct 1608 GGTTTAGGGTA 1618 >seq8185 Length=950 Score = 127 bits (140), Expect = 3e-27 Identities = 177/247 (72%), Gaps = 21/247 (9%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 339 TTAACCTTCCGGCACCGGGCAGGTGTCAGACCCTATACTTCATCTTTC-GAGTTTGCAGA 397 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || ||| ||||| |||| Sbjct 398 GTCCTGTGTTTTTGCTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTCT- 446 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | || ||| | || | |||||||||||||||| | | |||||||| | | Sbjct 447 ------GATTACT--CAGAGCGACGC-TTCTCCCGAAGTTACGCGTCGATTTTGCCTAGT 497 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||||||||| |||| ||| |||||||| || |||| | ||| ||||||||||||| Sbjct 498 TCCTTAACCACGAATCACTCGAGCGCCTTAGGATACTCTCCTCGACTACCTGTGTCGGTT 557 Query 242 TACGGTA 248 ||||||| Sbjct 558 TACGGTA 564 >seq6305 Length=1131 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||| ||||||||||||||||||| | |||||||||| |||||| ||| ||||| | Sbjct 52 GGCACACCTTCTCCCGAAGTTACGGTGTTATTTTGCCGAGTTCCTTCACCCGAGTTCTCT 111 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | |||||||| ||||||| || |||||||||||||||| |||| Sbjct 112 CAAGCGCCTTAGGATTCTCTCCCCACCCACCTGTGTCGGTTTGGGGTA 159 >seq219 Length=12377 Score = 84.2 bits (92), Expect = 3e-14 Identities = 157/228 (69%), Gaps = 26/228 (11%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 |||||||||||| | |||||| || ||| | | || |||| | |||||||||| | Sbjct 5862 GGGCAGGCGTCACACTGTATACGTCCTCTTGC-GAGTTAGCACAGTGCTGTGTTTTTGAT 5804 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 |||||||||| || ||||||||| || || | || | Sbjct 5803 AAACAGTCGCCAGAGCCTTTTCTCTGCGCCCTCCCCGAGGG-----------------GT 5761 Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||| |||||| || |||| |||||||| || |||||| |||||||| || | ||| Sbjct 5760 AG-GGC-CCCCTTATCGCGAACTTACGGGGTCAATTTGCCTAATTCCTTCACTTCCGTTA 5703 Query 198 ACCCGAACGCCTTAG--TATTCTCTACCTGACC-ACCTGTGTCGGTTT 242 | ||| |||||||| ||||| |||| | | |||||||||||||| Sbjct 5702 TCTCGAGCGCCTTAGGTTATTC---ACCTCATCTACCTGTGTCGGTTT 5658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694288486521