Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq11552 165 2e-38 seq1751 163 6e-38 seq219 138 2e-30 seq15 120 6e-25 seq5976 80.6 5e-13 seq5356 80.6 5e-13 >seq11552 Length=732 Score = 165 bits (182), Expect = 2e-38 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | || Sbjct 198 GGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGAAGGTTGGCT 257 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 ||| || ||||| | || ||||||| |||| ||| | ||||||||| || Sbjct 258 CAGAGCGGTCGGAAATCGCTCGTTGAGTGCAATGGCATAAGCCAGCCTGACTGCGAGACT 317 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 || ||| ||||| | |||||| ||| | || |||||||| ||| | | ||||| ||| Sbjct 318 GACAGGTCGAGCAGAGTCGAAAGACGGCCATAGTGATCCGGTGGTCCCGCGTGGAAGGGC 377 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||||| ||| | ||||||| Sbjct 378 CATCGCTCAACGGATAAAAGGTACGCCGGGGATA 411 >seq1751 Length=2850 Score = 163 bits (180), Expect = 6e-38 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 999 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 940 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || || || ||| | | | || |||| || || | ||| | Sbjct 939 CACGAAGGTTGGCTAAGTACGGTCGGACATCGTACGGTTAGTGTAATGGTAGAAGCCAGC 880 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||||| || || ||| |||||| |||||||| || | || |||||||| ||| Sbjct 879 TTAACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCATAGTGATCCGGTGGTT 820 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 819 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 772 >seq219 Length=12377 Score = 138 bits (152), Expect = 2e-30 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct 6249 GGGACAGTGAGTGCTGGGTAGTTTGACTGGGGCGGTCTCCTCCGAAAGAGTAACGGAGGA 6308 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || ||||| | ||||| ||||||||||| | | |||| || ||| ||| | Sbjct 6309 GCGCAAAGGTTGGTTCAGCGCGGATGGAAACCGCGTGTTGAGTGTAAGAGCACAAGCCAG 6368 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT-TAATGATCCGGCGG 289 || ||||||| | | | || ||||| |||||| ||||| || |||||| ||| Sbjct 6369 CTTTACTGCGAGAGCGACGGCTCGAGCAGTCTCGAAAG-AGGGCTCTAGTGATCCTGCGA 6427 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| || ||| |||| |||||||||| ||| ||||||||| Sbjct 6428 TCCCGTGTGGAAGGGTCGTAGCTCATCGGATAAAAGGTACTCTGGGGATA 6477 >seq15 Length=59725 Score = 120 bits (132), Expect = 6e-25 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||| |||| ||| || ||||||||| || |||||| ||||| |||||||||| Sbjct 40 AGTGCAATGGCATAAGCCTGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGTC 99 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || |||||||| ||| | | |||||| |||| |||||| ||||||||||| ||| Sbjct 100 GGTCATAGTGATCCGGTGGTCCCGCATGGAAGGGCCATCGCTCAACGGATAAAAGGTACG 159 Query 331 CTGGGGATA 339 | ||||||| Sbjct 160 CCGGGGATA 168 >seq5976 Length=1176 Score = 80.6 bits (88), Expect = 5e-13 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 47 CGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 1 >seq5356 Length=1268 Score = 80.6 bits (88), Expect = 5e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 62 CGGGACCCTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 3 Query 170 CG 171 || Sbjct 2 CG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982237147552