Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq379 284 3e-74 seq10039 251 2e-64 seq8814 226 6e-57 seq3582 219 9e-55 seq2675 190 4e-46 seq204 123 5e-26 >seq379 Length=8950 Score = 284 bits (314), Expect = 3e-74 Identities = 266/337 (79%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || ||| ||||| | |||||||||||||| ||||| |||||||||||||||| Sbjct 133 TTTACAACCCTAAGGCCTTCAT-CACACACGCGGCAT-GGCTGCATCAGGCTTTCGCCCA 190 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 191 TTGTGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 250 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||||| Sbjct 251 GTGGCTGATCATCCTCTCAGACCAGCTATAGATCGTCGCCTTGGTGAGCTTTTACCTCAC 310 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| || |||| |||| ||||| || |||| Sbjct 311 CAACAAGCTAATCTAACGCGGGCTAATCT-------AAAGGCGATAA-------ATCTTT 356 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| | |||||| |||| | || || | ||| Sbjct 357 CCCCCGAAGGGCACATACGGTATTAGCACCAGTTTCCCGGCGTTGTTCCGTACCTCTAGG 416 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTC 338 | ||||| | || ||||||||||||| ||| || || Sbjct 417 TATATTCCCACGCGTTACTCACCCGTCTGCCACTTTC 453 >seq10039 Length=819 Score = 251 bits (278), Expect = 2e-64 Identities = 257/334 (77%), Gaps = 16/334 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || ||| ||||| | || |||||||||| ||||| |||||||||||||||| Sbjct 221 TTTACAACCCTAAGGCCTTCAT-CATTCACGCGGCAT-GGCTGCATCAGGCTTTCGCCCA 278 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 279 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 338 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| || |||||| |||||||| ||| |||||| || Sbjct 339 GTGGCTGGTCGTCCTCTCAGACCAGCTATAGATCGTAGCCTTGGTAAGCTCTTACCTTAC 398 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| || ||| |||| | || | || |||| Sbjct 399 CAACTAGCTAATCTAACGCGGGCCAATCTTTCACCGATA------AA--------TCTTT 444 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | ||| ||| ||||| ||||||| | | ||||||| || | ||| || | | ||| Sbjct 445 CCCCCTAAGGGCGTATAAGGTATTACCTTTCGTTTCCAAAAGCTATTCCTTAGTGAAAGG 504 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | || ||||||||||||| ||| || Sbjct 505 CATGTTCCCACGCGTTACTCACCCGTCTGCCACT 538 >seq8814 Length=899 Score = 226 bits (250), Expect = 6e-57 Identities = 168/194 (87%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | || ||| ||||| | ||| |||||||||| |||| |||||||||| ||||| Sbjct 36 CTTTACGACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGCTTGCGCCC 93 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 94 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 153 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||| ||||||||||||||| ||||| || |||||| | |||||| ||||||||| || Sbjct 154 TGTTGCTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCA 213 Query 181 CCAACTAGCTAATC 194 ||||||| |||||| Sbjct 214 CCAACTATCTAATC 227 >seq3582 Length=1677 Score = 219 bits (242), Expect = 9e-55 Identities = 252/337 (75%), Gaps = 18/337 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | || | | ||||| | ||| |||||||||| |||| |||||||||| ||||| Sbjct 376 CTTTACGACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTAGATCAGGCTTGCGCCC 433 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 434 ATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 493 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||| |||||| |||||| | ||||| || |||||| | |||||| ||||||||| || Sbjct 494 TGTTGCTGATCGTCCTCTAAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCA 553 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||| |||||| || ||| ||| | ||||| | | || Sbjct 554 CCAACTATCTAATCTAACGCGGGCCAATCCTTT---------CCCGATAAAT------CT 598 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||| ||| | ||| |||||||| || |||||| | | ||| || | | Sbjct 599 TTCCCCCGAAGGGCTTATACGGTATTACTCTCAGTTTCCCGAGGCTATTCCGTAGAAAAG 658 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || | |||| | || ||||| ||||||||||||||| Sbjct 659 GGTATGTTCCCACGCGTTACTAACCCGTCCGCCGCTC 695 >seq2675 Length=2078 Score = 190 bits (210), Expect = 4e-46 Identities = 131/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 2078 TCAGGCTTGCGCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 2019 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| ||||||| ||||||||||||||| ||||| || |||||| | |||||| Sbjct 2018 TGTCTCAGTCCCAGTGTTGCTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGT 1959 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 ||||||||| ||||||||| |||||| Sbjct 1958 AGGCCATTACCCCACCAACTATCTAATC 1931 >seq204 Length=12833 Score = 123 bits (136), Expect = 5e-26 Identities = 130/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 || |||||||||||||| || ||| |||||||| ||||| || |||| ||||| Sbjct 12582 TCCCACACGCGGCATTG-CTCCGTCACGCTTTCGCGCATTGCGGAAGATTCGTTACTGCA 12640 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||||||||||||||| |||| ||||||||||||| || | | | ||| |||||| || Sbjct 12641 GCCTCCCGTAGGAGTCCGGACAGTGTCTCAGTTCCGATGCGGCGGGCCATGCTCTCACAC 12700 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | | ||| || ||| |||||| ||| ||||| ||||||| | || || Sbjct 12701 CCGCTACCCGTCTTCGGCTTGGTAGGCCTTTACCCCACCAACAACCTGAT 12750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071822294560