Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq5040 178 3e-42 seq384 104 5e-20 seq5953 84.2 5e-14 >seq5040 Length=1320 Score = 178 bits (196), Expect = 3e-42 Identities = 283/402 (70%), Gaps = 13/402 (3%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||| || || ||||||||||||||||| || || || || |||||||||| || Sbjct 976 CGATGGTCAACAGTTCACCGCCCACCTGGGTCCAGGCAAGTCCGGTCACCTGACCGATTT 917 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | || || || ||||| || || ||||||| |||||| | ||| ||||| Sbjct 916 CGTTCTTCTCTTCCGCCAGACCATACTTGAATTTCTTGACGCCGGAGTAGTCTTCCAGCA 857 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTT-----CCAGCGCATGTTCCTTGACCGC 175 |||| || || |||| ||| || || | || | || ||| ||||| | Sbjct 856 TCTCGGGCGAGAGGGTCACAGAG--GCCTTGTCGTTGGCCTCTACGTGCTCCCTGACCAC 799 Query 176 CTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTA 235 || ||||||||||| ||||| | ||||||||||| |||||||| || || |||||||| Sbjct 798 TTTCCGGCAGATCTTGGCGATTTCCCGCTCCAGGCCCCGCACACCCGCCTCACGGGTGTA 739 Query 236 GTAGCGGACGATGTCGCGGATCGTGCCGACTTC---AAATTCGATCTCGCCCTTCTTCAG 292 |||||||| | ||| || | ||| || |||| || | | ||| |||| || Sbjct 738 GTAGCGGATCAGGTCACGCA--GTGTCG-CTTCGGGAATCTTCAGTTCGTCCTTGCGCAA 682 Query 293 GCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTC 352 ||| || ||| |||||||||||| ||||| | || || |||| ||| || || Sbjct 681 GCCGTTTGCCTTGATCTGCTTGGGCAACAGGTAGCGCAGAGCAATATTGACCTTTTCTTC 622 Query 353 TTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||| ||||| | || || | |||||||||||||| Sbjct 621 CTCGGTGTAGCCCGGAATCCGGATGATCTCCATCCGGTCCAG 580 >seq384 Length=8864 Score = 104 bits (114), Expect = 5e-20 Identities = 267/400 (67%), Gaps = 14/400 (4%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||| |||||| || || || ||| || | |||| || || || |||||| | Sbjct 6441 CGATGTGCAGCAAATCCCCACCAACCGACGTGTAGGCCAAACCGGTCACAACACCGACCT 6382 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | || | ||||||||| || |||| | | || || ||||| ||||| | || ||| Sbjct 6381 GGTTCTCGTCCTCGGCCAGACCATAGCGGTACTTCCGAACGCCAAGGAAATCGTCAAGGT 6322 Query 121 AGTCGGCCG---TGACCTTCACCGAGAAGCGTTTTTCCAGCGC-ATGTTCCTTG--ACCG 174 ||||| || ||||| ||| || |||| | | | || | | |||| Sbjct 6321 TGTCGGACGAAATGACC---ACCTTTTC---TTCTTCCTTCTTGACGATCTTGGTCACCG 6268 Query 175 CCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGT 234 ||||||| | ||| | |||| ||||| ||| ||||| || ||||||||||||| Sbjct 6267 CCTTGCGCGCCAGCTTGGAAATCTCACGCTCAAGGTTCCGCACGCCCGCTTCGCGGGTGT 6208 Query 235 AGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGC 294 ||||||||| |||||| | || || | | |||| ||| |||||||| |||| Sbjct 6207 AGTAGCGGATCATGTCGGTCAACGCTTCGTCCGTCAGCTCGAACTCACCCTTCTTAAGGC 6148 Query 295 CATTGGCCGAAATCTGCTTGGGCGCGAGGT-ACTTGATGGCGATGTTGATCTTCTCGTCT 353 | | | | | ||| || | |||| || | ||||||| | | || |||||| Sbjct 6147 CGTGGTTCTTGACCTGTTTCGAAATCAGGTGACGT-TTGGCGATCTCGGCTTTTTCGTCT 6089 Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCA 393 ||||||||||||| || |||| | ||||||||||||| Sbjct 6088 TCGGTGTAACCCGCGAGCGGAATGATCTCCATCCGGTCCA 6049 >seq5953 Length=1174 Score = 84.2 bits (92), Expect = 5e-14 Identities = 159/230 (69%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 165 TCCTTGACCGCCTTGCGG--CAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGG 222 |||||||| ||||| ||| ||| | | | || ||| || ||| ||| ||||| | Sbjct 949 TCCTTGACGGCCTTACGGACCAGTCCGGCCAGTTC--GCGTTCAAGGTTACGTACACCTG 1006 Query 223 CTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATC--TC 280 |||| |||||||| ||||||| ||| || || | || | || | |||| |||| | || Sbjct 1007 CTTCACGGGTGTAATAGCGGATGATATCCCGCAGCGCGTCGTCATCAA--TCGACCACTC 1064 Query 281 GCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTT 340 ||| | || | ||||||||| | ||||||||| || | | | || || | Sbjct 1065 GCCGTCTTTGACGCCATTGGCTTTGAGCTGCTTGGGGATCAGATGCCGGCGTGCAATTTC 1124 Query 341 GATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGT 390 | |||||||||||| ||||| || || ||||| | |||||||||| Sbjct 1125 CACCTTCTCGTCTTCCGTGTAGCCACTGAGCCGAATGATCTCCATCCGGT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158207972032