Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3582 214 3e-53 seq10039 141 2e-31 seq204 129 1e-27 seq379 104 4e-20 >seq3582 Length=1677 Score = 214 bits (236), Expect = 3e-53 Identities = 216/281 (77%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| ||||||| ||||||||||||| | |||| | ||||||||||||||||||| Sbjct 59 CCCACACTTTCGCACCTCAGCGTCAGTATCGAGCCAGTGAGCCGCCTTCGCCACTGGTGT 118 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||| |||||||| |||||| |||||||| | |||||| | || Sbjct 119 TCCTCCAAATATCTACGAATTTCACCTCTACACTTGGAATTCCACTCACCTCTCTCGAAC 178 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | ||||| || |||| ||||||||||| | |||||| ||| Sbjct 179 TCAAGACCAGGAGTTTACAAGGCAGTTCCAGGGTTGAGCCCTGGGATTTCACCCTATACT 238 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||| | |||||| || ||| || Sbjct 239 TTCTGATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAACCCCCTCCG 298 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 |||||||||||||||||||||| ||||||||| || || || Sbjct 299 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGTTTCTT 339 >seq10039 Length=819 Score = 141 bits (156), Expect = 2e-31 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 109 CCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTT 168 ||||||| | ||| ||| | ||||||||||||||| ||||||||| | || Sbjct 11 CCTCTCCTGATCTCTAGATTACCAGTTTCAAATGCAGTTCCAAGGTTGAGCCTTGGGATT 70 Query 169 TCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGC 228 ||||||||||||| |||||||| || |||||| |||| ||| |||| | ||||| Sbjct 71 TCACATCTGACTTAATAATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGC 130 Query 229 TTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 | ||| ||| |||||||||||||||||||||||| ||||||||| ||||| || Sbjct 131 TAGCCCCCTTCGTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTT 183 >seq204 Length=12833 Score = 129 bits (142), Expect = 1e-27 Identities = 196/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||||||||| || | |||| | | | || | || || || Sbjct 12242 CCCACGCTTTCGTGCCTCAGCGTCAGGTAAGGCCCAGTCACCTGGCTACCCCTTCGGCGT 12301 Query 61 TCC-TCCGTATATCTACGCATTTCACCGCTACACACGGA-ATTCCGATTGCCTCTCCAGC 118 ||| | || ||||||||||||||||||||| ||| || | ||||||| ||||| | Sbjct 12302 TCCGTACG-ATATCTACGCATTTCACCGCTCCAC-CGTACGTTCCGATGACCTCTGCCTA 12359 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 ||||||| | ||||| |||| | ||||||||| | | ||||||| Sbjct 12360 CCTCAAGACCAGCAGTTCACTCTGCAATTCCTCGGTTGAGCCGAGGGATTTCACAAAATG 12419 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||||| | ||||||| |||| | | |||| ||||||| | | Sbjct 12420 CTTACTGATCCGCCTACGCACCCTTTAAGCCCAGTGATTCCGCCTAACGCTCGGGCCTCT 12479 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 |||||||||||||||||||||||| ||||||| Sbjct 12480 CGTATTACCGCGGCTGCTGGCACGAGATTAGCCG 12513 >seq379 Length=8950 Score = 104 bits (114), Expect = 4e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||| |||||| |||| ||| |||| | |||||| || ||| ||||||||| Sbjct 2 CCGCCTACGCGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTCCGTATTACC 61 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||| ||||||||| |||| ||| Sbjct 62 GCGGCTGCTGGCACGGAGTTAGCCGGAGCTTCTTC 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828666903267