Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq379 295 2e-77 seq10039 264 3e-68 seq8814 251 2e-64 seq3582 239 1e-60 seq2675 224 2e-56 seq204 138 3e-30 >seq379 Length=8950 Score = 295 bits (326), Expect = 2e-77 Identities = 312/410 (76%), Gaps = 22/410 (5%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct 133 TTTACAACCCTAAGGCCTTCATCACACACGCGGCATGGCTGCATCAGGCTTTCGCCCATT 192 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 193 GTGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 252 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| |||| || ||||| | ||| Sbjct 253 GGCTGATCATCCTCTCAGACCAGCTATAGATCGTCGCCTTGGTGAGCTTTTACCTCACCA 312 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || |||||||| | ||| | ||| | | || | || | ||| | || Sbjct 313 ACAAGCTAATCTAACGCGGGCTAATCTAAAGGCGATA------AATCTTTCCCCCGAAGG 366 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| | |||||| | ||| | || || ||| | Sbjct 367 GC-----AC---ATACGGTATTAGCACCAGTTTCCCGGCGTTGTTCCGTACCTCTAGGTA 418 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| | ||||||||||||| |||||| || | | | | | ||||| Sbjct 419 TATTCCCACGCGTTACTCACCCGTCTGCCACTTTCCA--CTACCCGAAGGTAGCTTC--- 473 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 474 ---TCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGTTCTGAG 520 >seq10039 Length=819 Score = 264 bits (292), Expect = 3e-68 Identities = 173/191 (91%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||| Sbjct 221 TTTACAACCCTAAGGCCTTCATCATTCACGCGGCATGGCTGCATCAGGCTTTCGCCCATT 280 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 281 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 340 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| |||||| |||| ||| || ||||| ||| Sbjct 341 GGCTGGTCGTCCTCTCAGACCAGCTATAGATCGTAGCCTTGGTAAGCTCTTACCTTACCA 400 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 401 ACTAGCTAATC 411 >seq8814 Length=899 Score = 251 bits (278), Expect = 2e-64 Identities = 302/411 (73%), Gaps = 32/411 (8%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||| |||| ||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 36 CTTTACGACCCTAAGGCCTTCATCACTCACGCGGCATGGCTAGATCAGGCTTGCGCCCAT 95 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 96 TGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 155 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 | |||| ||||||||||| |||||||| |||||| | || ||| |||||||||||| || Sbjct 156 TTGCTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACC 215 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| |||| | | || || | ||| | | Sbjct 216 AACTATCTAATCTAACGCGGGCCGATCC--TTCTCCGA----TAAATCTTTCCCCCGAAG 269 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| ||| || |||| ||||||||||||||| ||| || | || Sbjct 270 G----GCG----TATAAGGCATTACTCACCGTTTCCAGTGGCTATTCCTTAGAAAAGGGT 321 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||| ||||||||||| || | | |||| Sbjct 322 ACGTTCCCACGCGTTACTAACCCGTCCGCCGCTAGAC-CCGAA----------------- 363 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 364 GGTCTCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGTTCTGAG 414 >seq3582 Length=1677 Score = 239 bits (264), Expect = 1e-60 Identities = 297/411 (72%), Gaps = 32/411 (8%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||| |||| | ||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 376 CTTTACGACCCTAGGGCCTTCATCACTCACGCGGCATGGCTAGATCAGGCTTGCGCCCAT 435 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 436 TGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 495 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 | |||| || |||||| | |||||||| |||||| | || ||| |||||||||||| || Sbjct 496 TTGCTGATCGTCCTCTAAAACCAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACC 555 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| | ||| |||| | || | || | ||| | | Sbjct 556 AACTATCTAATCTAACGCGGGCCAATCCTTTCCCGATA------AATCTTTCCCCCGAAG 609 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | |||| |||||||| | | |||||| | || ||| || | || Sbjct 610 GGC--------TTATACGGTATTACTCTCAGTTTCCCGAGGCTATTCCGTAGAAAAGGGT 661 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||| ||||||||||| |||| ||||| Sbjct 662 ATGTTCCCACGCGTTACTAACCCGTCCGCCGCTCGGTCCCGAAG---------------- 705 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 706 GT--GCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGTTCTGAG 754 >seq2675 Length=2078 Score = 224 bits (248), Expect = 2e-56 Identities = 272/368 (74%), Gaps = 32/368 (9%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 2078 TCAGGCTTGCGCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 2019 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||| ||||||| |||| ||||||||||| |||||||| |||||| | || ||| Sbjct 2018 TGTCTCAGTCCCAGTGTTGCTGATCATCCTCTCAAACCAGCTATAGATCGTAGACTTGGT 1959 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227 |||||||||||| ||||||| |||||| | ||| |||| | | || Sbjct 1958 AGGCCATTACCCCACCAACTATCTAATCTAACGCGGGCCAATCC--TTCTCCGA----TA 1905 Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287 || | ||| | || ||| ||| ||||||| ||||||||||||||| || Sbjct 1904 AATCTTTCCCCCGAAGG----GCG----TATAAGGTATTACTCACCGTTTCCAGTGGCTA 1853 Query 288 TCCCCCTCCATCA-GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA 346 | || | | | || | |||||| | ||||| ||||||||||| ||| ||| |||| Sbjct 1852 T-TCCTTAGAGAAGGGTATGTTCCCACGCGTTACTAACCCGTCCGCCGCTCCTCACCGAA 1794 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 | || | || ||||||||||||||||||||||||||||||||||| Sbjct 1793 G--------TG--------AAGCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 1750 Query 407 AATCTGAG 414 |||||| Sbjct 1749 GTTCTGAG 1742 >seq204 Length=12833 Score = 138 bits (152), Expect = 3e-30 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||| || ||||||||||| ||| | ||| |||| ||| ||||| | || |||| || Sbjct 12577 CTTCATCCCACACGCGGCATTGCTCCGTCACGCTTTCGCGCATTGCGGAAGATTCGTTAC 12636 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||| |||||||||||||||| |||| ||||||||||||| || ||| || ||| ||||| Sbjct 12637 TGCAGCCTCCCGTAGGAGTCCGGACAGTGTCTCAGTTCCGATGCGGCGGGCCATGCTCTC 12696 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||| |||| || ||| || ||| |||| ||||||| ||||| | || || Sbjct 12697 ACACCCGCTACCCGTCTTCGGCTTGGTAGGCCTTTACCCCACCAACAACCTGAT 12750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222197362752