Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3582 349 8e-94 seq204 219 1e-54 seq10039 196 1e-47 seq379 127 5e-27 >seq3582 Length=1677 Score = 349 bits (386), Expect = 8e-94 Identities = 274/328 (84%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||| | | Sbjct 337 GAAACCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGTTAGCGTTGTTC 278 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||||||||||||||||| | |||||| || | |||| ||||||| | | | Sbjct 277 GGAATTACTGGGCGTAAAGCGCACGTAGGCGGATCAGAAAGTATAGGGTGAAATCCCAGG 218 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||||||| || ||||| || ||||| | || || |||| | ||| || ||||||| Sbjct 217 GCTCAACCCTGGAACTGCCTTGTAAACTCCTGGTCTTGAGTTCGAGAGAGGTGAGTGGAA 158 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 |||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 157 TTCCAAGTGTAGAGGTGAAATTCGTAGATATTTGGAGGAACACCAGTGGCGAAGGCGGCT 98 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||| | |||||| |||||| |||||| |||||||||||||||||||||||||| Sbjct 97 CACTGGCTCGATACTGACGCTGAGGTGCGAAAGTGTGGGGAGCAAACAGGATTAGATACC 38 Query 312 CTGGTAGTCCACGCCGTAAACGATGAAT 339 |||||||||||| ||||||||||||||| Sbjct 37 CTGGTAGTCCACACCGTAAACGATGAAT 10 >seq204 Length=12833 Score = 219 bits (242), Expect = 1e-54 Identities = 254/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 |||||| |||||||| |||||||||||||||||||||||| || | ||||||| Sbjct 12522 AGGAAGGGCCGGCTAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGCCCGAGCGTTAG 12463 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 |||||| ||||||| ||||||||||||||| || | |||| |||||| | Sbjct 12462 GCGGAATCACTGGGCTTAAAGGGTGCGTAGGCGGATCAGTAAGCATTTTGTGAAATCCCT 12403 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG-AGGGGCAAGTG 188 ||||||||| || | ||| |||||| || || ||| | ||| || || | | Sbjct 12402 CGGCTCAACCGAGGAATTGCAGAGTGAACTGCTGGTCTTGAG-GTAGGCAGAGGTCATCG 12344 Query 189 GAATTCCTA--GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||| | || ||| ||||||||||||||||||||| ||||| || || | || Sbjct 12343 GAA--CGTACGGTGGAGCGGTGAAATGCGTAGATATCGTACGGAACGCCGAAGGGGTAGC 12286 Query 247 CGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAG 306 | | | |||| | || ||||| ||||||| |||||||||||||| ||||||||||||| Sbjct 12285 CAGGTGACTGGGCCTTACCTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAG 12226 Query 307 ATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 |||||||||||||||||||||||||||||| ||||| Sbjct 12225 ATACCCTGGTAGTCCACGCCGTAAACGATGTGCACTAG 12188 >seq10039 Length=819 Score = 196 bits (216), Expect = 1e-47 Identities = 152/181 (84%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | | Sbjct 181 GAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTC 122 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||||||||||||||||| | |||||| || || |||||||||| |||||| | | | Sbjct 121 GGAATTACTGGGCGTAAAGCGCACGTAGGCGGATTATTAAGTCAGATGTGAAATCCCAAG 62 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 |||||||| || ||||| |||||||||| |||||| |||||| || ||||||| Sbjct 61 GCTCAACCTTGGAACTGCATTTGAAACTGGTAATCTAGAGATCAGGAGAGGTTAGTGGAA 2 Query 192 T 192 | Sbjct 1 T 1 >seq379 Length=8950 Score = 127 bits (140), Expect = 5e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| Sbjct 96 GAAGAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTG 37 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103 | |||||||||||||||||||| | ||||||| || Sbjct 36 TTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203000545536