Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq14707 168 2e-37 seq426 129 2e-25 seq247 120 9e-23 seq3218 102 3e-17 seq7925 87.8 6e-13 >seq14707 Length=582 Score = 168 bits (186), Expect = 2e-37 Identities = 242/338 (72%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 2594 TTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTG----CTTAC 2649 |||||| ||||| || |||| ||||| ||||| || ||||| ||||| ||| Sbjct 549 TTGGTGACAAAGTGCAGCTGGTAGGTGATGACTTGTTTGTAACCAACACCAAAATCTTGT 490 Query 2650 CTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGTTAACCAAAT 2708 || | || || | | |||| | | ||||| || || ||||| | ||||| || Sbjct 489 CTCGC----GGCATCGAA-AACAGTGTAGGCAACTCTATTCTGATCAAGTTCAACCAGAT 435 Query 2709 CGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGC 2768 ||| | || |||||||| | || || || | ||||| ||||| || || | ||| || Sbjct 434 TGGTTCCTTAACTGAAACGCTGGAAGCCATTAAGATGGCAAAAGATGCCGGGTTCACTGC 375 Query 2769 AGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGC 2828 ||| |||| |||||||| ||||| || |||||| | || ||||||||| | ||||| | Sbjct 374 AGTTATATCCCACCGTTCTGGTGAGACCGAAGATGCCACTATCGCTGATTTAGCAGTGGG 315 Query 2829 AACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATA 2888 ||| || |||||||| || ||||||||| ||| || |||| || |||||||||| Sbjct 314 TACTGCAGCGGGTCAAATCAAAACAGGTTCACTGTGTCGCTCTGATCGCGTTGCTAAATA 255 Query 2889 CAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAG 2926 ||| ||||| || || || ||||| |||| | ||||| Sbjct 254 CAATCAATTACTGCGCATTGAAGAAGAACTAGCTGAAG 217 >seq426 Length=8244 Score = 129 bits (142), Expect = 2e-25 Identities = 266/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| || || | |||||||| || ||||||||| | ||||||||||| |||||| | Sbjct 1272 TACCCGATTATTTCCATCGAAGACGGCATGGACGAAGATGACTGGGACGGCTGGAAAGCC 1213 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 |||||||| || | || | || || || | || || ||||| | |||||||| ||| Sbjct 1212 CTTACTGATCGCATCGGGGACAAGGTACAGCTTGTCGGAGACGATCTGTTCGTAACCAAC 1153 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGA-ACACGCTGCTAACTCAATCCTTATCAAAGT 2699 | || || | | || | | ||| | || ||||| || ||| | || || Sbjct 1152 AAGGCGCGACTGCACGATGGCA-TCAAGATGGGTGTCGCGAACTCCATTCTTGTAAAGGT 1094 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| || || | |||| ||||| |||| || | || |||||| | | || | Sbjct 1093 CAACCAGATTGGGTCACTGACAGAAACGCTTGAGTCTGTAGAGATGGCGCACAAGGCACG 1034 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| ||||| ||||| ||||| | || ||||| || | Sbjct 1033 CTACACGGCTGTCATGTCTCACCGCTCAGGCGAAACCGAAGACGCGACCATCGCAGACCT 974 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 ||| || || || || |||||| || || || || || | | || ||||||| | Sbjct 973 TGCTGTGGCGACCAATTGTGGTCAGATCAAAACCGGCTCGCTTGCCCGATCTGACCGGTT 914 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 || |||||||| || | | || || ||||| Sbjct 913 GGCGAAATACAATCAGCTCATCCGCATTGAAGA 881 >seq247 Length=11628 Score = 120 bits (132), Expect = 9e-23 Identities = 287/429 (67%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 2510 TGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACG 2569 |||| ||| | ||||| ||| | | |||||||| || ||| |||| |||||||||| | Sbjct 4162 TGGTCAACGACTACCCGATCCTGTCCATCGAAGACGGCATGTCCGAAGACGACTGGGATG 4103 Query 2570 GTTGGAA-ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTC 2628 | ||| || | | || ||| || || | || || || |||| || |||||| | Sbjct 4102 GCTGGGCGATGT-TGACGGAAGTGCTGGGCGACAAGGTACAGCTGGTGGGGGACGACCTG 4044 Query 2629 TTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCA-GAACACGCTGCTAACTCAAT 2687 || || || ||| | | || | | | ||||| ||| | | | ||| ||||| || Sbjct 4043 TTTGTGACCAACCCGGTCCGTCTGGCAGACGGTATCGCACGGGGATG-TGCGAACTCCAT 3985 Query 2688 CCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGC 2747 | ||||||| ||||||||||| ||| |||| ||||| | | || |||| ||||| Sbjct 3984 GTTGGTCAAAGTGAACCAAATCGGCACTCTGACCGAAACGCTCAAGGCGGTCGATATGGC 3925 Query 2748 GAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAAC 2807 | || | || || || | || |||||||| || || || || ||| | || Sbjct 3924 CCACCGCGCGCGCTATACCAACGTGATGTCGCACCGTTCGGGCGAGACCGAGGATGCGAC 3865 Query 2808 AATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACG 2867 || || ||| | || || || || || ||||| || || || || || || | || Sbjct 3864 GATTGCAGATCTCGCGGTGGCGACCAATTGCGGTCAGATCAAAACCGGATCGCTGGCGCG 3805 Query 2868 TACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGT 2927 | ||||| | || ||||||||||||||| | || |||||||| |||| |||| Sbjct 3804 GTCGGACCGGTTGGCCAAATACAACCAATTGATCCGCATCGAAGAAATGCTTGCTGAAAC 3745 Query 2928 TGCAGAATA 2936 || ||||| Sbjct 3744 CGCGGAATA 3736 >seq3218 Length=1809 Score = 102 bits (112), Expect = 3e-17 Identities = 329/504 (65%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 1678 ATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTA 1737 |||| || ||| |||| || ||| ||||||| ||||| ||||| || | ||||| Sbjct 23 ATTATCGACGTCCACGCCCGCGAAATCCTTGATAGCCGCGGCAACCCCACCGTGGAAGTT 82 Query 1738 GAAGTTTACACT-GAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAAC 1796 || || || || ||| || | | ||||||| || || || || ||||| || Sbjct 83 GACGTC-ACCCTCGAAGACGGGACCATGGGTCGCGCGGCTGTGCCATCGGGCGCATCCAC 141 Query 1797 TGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGG 1856 || | || || || || ||||| |||||||| |||||| || ||| || || Sbjct 142 CGGCGTGCATGAGGCCGTTGAACTGCGTGATGGCGACAAAAGCCGCTACATGGGCAAGGG 201 Query 1857 TACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGA-GCACATCATCGGATTCG 1915 | || ||| || || | || ||| | || || || || | | | || || | Sbjct 202 TGTTCTAAACGCTGTGGCCGCTGTGAACGGTGAAATCGCCGACGCGCTTG-TGGGCTTTG 260 Query 1916 ACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACA 1975 | | | || ||| ||| || || ||| ||||||| |||||||| || || || | Sbjct 261 AGGCAACGGAACAAGAAGCCATCGATGCCGCCATGATCGAGCTTGACGGCACCCCCAATA 320 Query 1976 AAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTG 2035 | | ||||| || ||||| || | || || || || || || |||| ||| |||| Sbjct 321 AGGCGCGCCTTGGCGCAAACGCCATCTTGGGCGTCTCCATGGCCGTTGCACACGCCGCTG 380 Query 2036 CTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGG---ATTCAACACTAAAGTTC 2092 | ||||| | | ||||||||| ||||| | ||||| || | | | |||| Sbjct 381 CCGACTATGTGGGCCAACCACTTTACCGCTACATCGGCGGCACATCCGCCCGT---GTTC 437 Query 2093 TTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTT 2152 | || || |||||||||||||| ||||||||| || |||| || |||| Sbjct 438 TGCCTGTGCCGATGATGAACATCATTAACGGTGGTGAACATGCAGATAACCCCATCGACA 497 Query 2153 TCCAAGAATTTATGATTGTACCTG 2176 |||||||||| ||||| | |||| Sbjct 498 TCCAAGAATTCATGATCATGCCTG 521 >seq7925 Length=972 Score = 87.8 bits (96), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 2090 TTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCG 2149 |||| || || ||||||||||| |||||||| |||||| ||| | ||| || |||| Sbjct 776 TTCTGCCGACCCCAATGATGAATATCATCAATGGTGGTGAGCACGCCGACAACCCGATCG 717 Query 2150 CTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAA-CATTCAAAGAAGCGCTTCGT 2208 | |||||||||||||||| | || | | ||| || |||| || ||| ||||| Sbjct 716 ATATCCAAGAATTTATGATCATGCCGGTTAATGCTGAAAGCATT-GCTGATGCGGTTCGT 658 Query 2209 TGGGGTGCTGAAATCTTCCACGCGCTTAAGAA 2240 ||| ||||||| |||||| |||| ||||| Sbjct 657 ATGGGCTCTGAAATTTTCCACACGCTGAAGAA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156007683548388