Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq486 156 7e-33 seq1036 149 1e-30 seq6724 116 6e-21 seq10619 111 2e-19 seq44 93.3 7e-14 >seq486 Length=7659 Score = 156 bits (172), Expect = 7e-33 Identities = 218/308 (71%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 196067 ATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGAC 196126 ||||| ||||| ||||| || | |||| || ||| | |||| | ||| | || Sbjct 3324 ATGCAGCAGTACCACGACCTGCTCCAGCTCGTTCTCGACACCGGCGTCCGCAAGGACGAT 3265 Query 196127 CGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA- 196185 || |||||||| ||||| || ||||| |||||||||||| | || | || Sbjct 3264 CGCACCGGCACGGGCACGCTCTCGGTCTTCGGCTACCAGATGCGCTTCAACCTCGATGAG 3205 Query 196186 -----------CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATT 196234 ||| ||||| ||||||||||| ||||| |||| ||| || ||||| Sbjct 3204 GCCACCGGCGGCGGGTTCCCACTGGTCACCACCAAGAAGGTCCACACGCGCTCGATCATC 3145 Query 196235 CATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGT 196294 || || ||||||||||||||||| || ||||| |||||| |||||||| |||||| Sbjct 3144 CACGAGCTGCTGTGGTTCCTCAAAGGCGACACGAACATCGCCTACCTGAAGGACAACAAA 3085 Query 196295 GTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAG 196354 ||| | |||||| |||||||||| | | ||| ||||| || ||||| ||||| ||| Sbjct 3084 GTCACCATCTGGGACGAGTGGGCCGATGCCGCCGGCAACCTCGGCCCGGTCTACGGCAAG 3025 Query 196355 CAGTGGCG 196362 |||||||| Sbjct 3024 CAGTGGCG 3017 >seq1036 Length=4296 Score = 149 bits (164), Expect = 1e-30 Identities = 188/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 196108 CGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGA 196166 |||||| | ||| | ||||| |||||||||||||| | | | | | ||| || | Sbjct 1731 CGGCCATAAGAAAACCGACCGCACCGGCACAGGCACCATCAGTGTGTTT-GGCTATCAAA 1789 Query 196167 TGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTT 196226 |||| || ||| | ||| | || || ||||| || ||||| || ||| ||||||||||| Sbjct 1790 TGCGTTTTGATTTACAACAGGGCTTTCCGCTTGTTACCACCAAAAAATGCCATCTGCGTT 1849 Query 196227 CCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATG 196286 | || ||||||||| | |||||||| | || || || |||||||| |||||| | | Sbjct 1850 CGATTATTCATGAATTACTGTGGTTTTTAAAAGGTGAAACCAACATTGGCTACCTGCAAG 1909 Query 196287 ACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTT 196346 | || || || || |||||||| |||||||||| ||| ||| | || || ||||| | Sbjct 1910 AAAATGGCGTATCAATCTGGAATGAGTGGGCGACTGAAACAGGTGAGCTCGGACCGGTAT 1969 Query 196347 ACGGTAAGCAGTGGCG 196362 |||| ||||||||| Sbjct 1970 ACGGCGCGCAGTGGCG 1985 >seq6724 Length=1088 Score = 116 bits (128), Expect = 6e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 || || || ||| |||| |||||||| ||||| |||||||| || ||| |||||||| | Sbjct 839 GATGGCTTTCCGTTGGTGACCACGAAAAAACTGCATCTGCGCTCAATCGTTCATGAATTA 780 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 ||||||| | || || ||||||||||| ||||| || || || ||||| || || Sbjct 779 TTGTGGTTTTTGTCTGGTGATACCAACATCAAATACCTCAAGGAAAATGGTGTTTCGATT 720 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| |||| ||||| ||||| |||| | |||| || || || || | || ||||| Sbjct 719 TGGGACGAATGGGCTGACGAAAACGGTGATTTGGGCCCTGTATATGGGCATCAATGGCG 661 >seq10619 Length=779 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 196199 GTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAAC 196258 || ||||| |||||||| ||||| || ||||| ||||| ||||||||||| || Sbjct 1 GTGACCACCAAGAAACTGCATCTCAAATCGATCATCCATGAGCTGCTGTGGTTTCTGGCG 60 Query 196259 GGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCG 196318 || || ||||||||| || ||||| | || || ||||| |||||| |||| ||||| Sbjct 61 GGTGATACCAACATCGCCTATCTGAAGGCGAATGGCGTCTCAATCTGGGACGAATGGGCC 120 Query 196319 AACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||||| ||| | ||||||||||| ||||| | || ||||| Sbjct 121 GACGAAAACGGCGATCTGGGGCCGGTCTACGGCCATCAATGGCG 164 >seq44 Length=32007 Score = 93.3 bits (102), Expect = 7e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCA-CAGATGCGCTTCGATCTGCA 196182 ||||| ||||| |||||||| || |||| ||| ||||||||||| |||||| Sbjct 27365 GACCGGACCGGTACAGGCACGCGCTCGGTGTTCGG-GCATCAGATGCGCTTTGATCTGGC 27423 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 ||||| || || ||||||| || ||||| || || | |||||| | ||||| || Sbjct 27424 CGACGGGTTTCCCATGGTCACGACTAAGAAGCTGCACTTAAAGTCCATCGTGCATGAGCT 27483 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||| |||||| || ||| ||||| || || || || || | || || || || Sbjct 27484 GCTCTGGTTCATCGCCGGCGACACAAATATTGCCTATCTCAAAGCAAATGGGGTGAGCAT 27543 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| |||| |||||| | || ||| | || ||||| || || || | |||||||| Sbjct 27544 TTGGGACGAATGGGCGGATGAGAAGGGTGATCTCGGGCCAGTCTATGGGCACCAGTGGCG 27603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771382526770440