Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq89 282 6e-74 seq6 167 4e-39 >seq89 Length=5757 Score = 282 bits (312), Expect = 6e-74 Identities = 204/232 (88%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || ||| |||| | ||||| |||| ||||||| ||| | Sbjct 5212 GTACAAAGGGCAGGGACGTAATCGGCGCAAGCT-GCTGACTTGCGCCTACTAGGCATT-C 5269 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| || ||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 5270 CTCGTTGAAGATTAATAATTGCAATAATCTATCCCCATCACGATGCATACTCAAAAGATT 5329 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| Sbjct 5330 ACCTAGACCTGTCGGCCAAGGTTGTAAACTCGTTGGATGCATCAGTGTAGCGCGCGTGCA 5389 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 5390 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 5441 >seq6 Length=4482429 Score = 167 bits (184), Expect = 4e-39 Identities = 179/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||| || ||| ||| | | ||| |||| ||||| ||| | Sbjct 1026126 GTACAAAAAACAGGGACGTAATCGGCGCAGGCT-GCTAACTTGCGCCCACTAGACATT-C 1026069 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT-T 119 ||||||||||| || |||||||| | ||||| ||||||||| | ||||| | | Sbjct 1026068 CTCGTTGAAGATTAATAATTGCAACACCCCATCCCAATCACGATGCATACTCAAAAAAGT 1026009 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||||||||||||| || |||| || || | ||||||| |||||||||| Sbjct 1026008 ACCTATATCTGTCGGCCAAGGTTGTAAACTCACTGGATGCTTCAGTGTGGCGCGCGTGCA 1025949 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 ||||||||||||||| |||||| | |||||||||||| |||| ||||| ||| Sbjct 1025948 GCCCAGAACATCTAACGGCATCGCCGACCTGTTATTGTCTCACGCTTCCTTGG 1025896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993654765