Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq89 221 5e-55 >seq89 Length=5757 Score = 221 bits (244), Expect = 5e-55 Identities = 243/320 (76%), Gaps = 19/320 (6%) Strand=Plus/Minus Query 382 GATGCTGGC-GTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||| | || |||| || || ||||||||| ||||||||||||||||||||||| Sbjct 2245 GATGCTGGCTGAAACGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 2186 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT----G 496 | | ||||||| | ||||| |||||| || ||| ||||||||| | | ||| | Sbjct 2185 TATGTGCGAGTATGCGGGTGACAAACCTGTATGCGCAATGAAAGTAAGAGTAGGGAAAAG 2126 Query 497 GG----------AACCC-GTGAGGGT--GCACCATCGACCGATCCTGATGTCTTCGGATG 543 || ||| || | | | ||||| ||||||| | ||| || | | Sbjct 2125 GGTGACATCTTTAACAATGTTATGCTTTGCACCTACGACCGACCACGATCTCAGAGAGAG 2066 Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 | ||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| Sbjct 2065 G-TTTGAGTTGGAGCATATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGAA 2007 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| ||| |||||| ||| |||||| ||| |||| | ||| ||||||||||| ||||| Sbjct 2006 TGAAGTCAGGGGAAACCCTGATGGAGGTTCGTAGCGATACTGACGTGCAAATCGTTCGTC 1947 Query 664 AAATTTGGGTATAGGGGCGA 683 ||| |||||||||||||||| Sbjct 1946 AAACTTGGGTATAGGGGCGA 1927 Score = 152 bits (168), Expect = 2e-34 Identities = 136/169 (80%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| | |||| | ||| | ||||| | ||||| |||| ||||||||||| Sbjct 2693 GAGTCGCGTTCATCGGGATTTGAGCGCAAAATGTGTGGTAAGTTTCACATAAAGCTAAAT 2634 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| |||||||||||| ||||||| |||| ||||||||||||| |||||||| Sbjct 2633 ATTGGCGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGTTCTTTGGAA 2574 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 |||||||| ||||| | |||||||| ||||| ||||||| ||| |||| Sbjct 2573 AGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAAGGAAGCGATTGGAACC 2526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079981317050