Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq89 327 2e-87 seq6 201 2e-49 seq9 95.1 2e-17 seq3 77.0 5e-12 seq2 77.0 5e-12 >seq89 Length=5757 Score = 327 bits (362), Expect = 2e-87 Identities = 228/258 (88%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5357 ACTCGTTGGATGCATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 5416 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | | || | | ||||||||||||||| | | Sbjct 5417 CCTGTTATTGCCTCAAACTTCCTTGCGTTAGACACGCAAAGTCCCTCTAAGAAGTGATAC 5476 Query 122 ACCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| || |||||||||||||||||||||||||||||| |||||||| Sbjct 5477 AAGAACACAAAGTTCTTGACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 5536 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5537 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 5596 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 5597 AAGAGCTATCAATCTGTC 5614 >seq6 Length=4482429 Score = 201 bits (222), Expect = 2e-49 Identities = 200/258 (78%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| ||| | | ||||||| |||||||||| ||||||||||||||| |||||| | || Sbjct 1025981 ACTCACTGGATGCTTCAGTGTGGCGCGCGTGCAGCCCAGAACATCTAACGGCATCGCCGA 1025922 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||| |||| ||||| | || | || | | | |||| ||||||| | | Sbjct 1025921 CCTGTTATTGTCTCACGCTTCCTTGGGTTAGACACGCAGATTCCCGGTAAGAAGTGATAC 1025862 Query 122 ACCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| | ||| || ||| ||||| || ||||||||||| |||| |||||||| Sbjct 1025861 AAGAACACGAAGTTTTTGACCCTACTTAGCGGGGAAAGGTCTCGTTTGTTAACGGAATTA 1025802 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | | ||||||||||||| | ||| ||||||||| | ||||||||| |||||||||||| Sbjct 1025801 AGGAAACAAATCACTCCATCGACTGAGAACGGCCCTCTACCACCACCGATAGAATCAAGA 1025742 Query 241 AAGAGCTATCAATCTGTC 258 ||||||||| ||||||| Sbjct 1025741 AAGAGCTATAGATCTGTC 1025724 >seq9 Length=4031372 Score = 95.1 bits (104), Expect = 2e-17 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||||||| || ||||||||||||| | | | | ||||||||| | |||| ||||| Sbjct 1430429 TTTAGCAGCTTCGAGTCTCGTTCGTTAGCAAACGTGAGCAGACAAATTATTCCATCAACT 1430488 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 | |||||| | ||||| ||||| ||||||||||||||||| | | | || ||| |||| Sbjct 1430489 AGTAACGGCTACGCACCGCCACCAATAGAATCAAGAAAGAGTTCTGAGTCCGTCAACCCT 1430548 >seq3 Length=6207691 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 |||||| ||||||||||| || || || | |||||||||| |||| | |||||||||||| Sbjct 6118013 TTCGTTGTCGGAATTAACTAGCCATATTAGTCCACCAACTCAGAAAGACCATGCACCACC 6118072 Query 225 ACCCATAGAA 234 ||| | |||| Sbjct 6118073 ACCTACAGAA 6118082 >seq2 Length=9359174 Score = 77.0 bits (84), Expect = 5e-12 Identities = 61/73 (84%), Gaps = 4/73 (5%) Strand=Plus/Minus Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||||||| | ||| | ||||||||||||| |||||||| | ||||| ||| | Sbjct 7291000 TAAGGTCTCGTT----AACGGGACTAACCAGACAAATTACTCCACCGAGTAAGAGCGGGC 7290945 Query 215 ATGCACCACCACC 227 ||||||||||||| Sbjct 7290944 ATGCACCACCACC 7290932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793276751