Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq89 282 8e-74 seq6 172 1e-40 >seq89 Length=5757 Score = 282 bits (312), Expect = 8e-74 Identities = 253/313 (81%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC--CAGGCCCGCTTTGG-CGGGTCGCCGGCTTCT 76 || ||||||||||||||||||||||| || | | | || | || | ||||| Sbjct 5523 GAACGAGACCTTAACCTGCTAAATAGGGTCAAGAACTTTGTGTTCTTGTATCA--CTTCT 5466 Query 77 TAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| | || || | | | ||||||||||||||||||||||||||||||||| Sbjct 5465 TAGAGGGACTTTGCGTGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 5406 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||| |||||||||||||||||| | |||||||||| | |||||| Sbjct 5405 CTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATGCATCCAACGAGTTTACAACCTTG 5346 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| |||||| ||||||||| | | | ||||| |||||||||| ||||||||| Sbjct 5345 GCCGACAGGTCTAGGTAATCTTTTGAGTATGCATCGTGATGGGGATAGATTATTGCAATT 5286 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||||||||||| |||| |||| |||| ||| ||||||||| Sbjct 5285 ATTAATCTTCAACGAGGAATGCCTAGTAGGCGCAAGTCAGCAGCTTGCGCCGATTACGTC 5226 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 5225 CCTGCCCTTTGTA 5213 >seq6 Length=4482429 Score = 172 bits (190), Expect = 1e-40 Identities = 196/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||| |||| | | || || | || | ||||| |||| |||||||||||| | | Sbjct 1025868 CTTCTTACCGGGAATCTGCGTGTCTAACCCAAGGAAGCGTGAGACAATAACAGGTCGGCG 1025927 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| ||||||||||||||| |||||||||| ||||||| | ||| ||||| | | Sbjct 1025928 ATGCCGTTAGATGTTCTGGGCTGCACGCGCGCCACACTGAAGCATCCAGTGAGTTTACAA 1025987 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG--TCGTGCTGGGGATAGAGCAT 248 ||||||||| || | | |||| ||| || | | || ||||| | ||||| | | | Sbjct 1025988 CCTTGGCCGACAGATATAGGTA--CTTTTTTGAGTATGCATCGTGATTGGGATGGGGTGT 1026045 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| |||||||||||||||| ||||| |||| || | |||| ||| || Sbjct 1026046 TGCAATTATTAATCTTCAACGAGGAATGTCTAGTGGGCGCAAGTTAGCAGCCTGCGCCGA 1026105 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||| |||||| Sbjct 1026106 TTACGTCCCTGTTTTTTGTA 1026125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947191749888