Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12 145 6e-30 >seq12 Length=3345923 Score = 145 bits (160), Expect = 6e-30 Identities = 256/369 (69%), Gaps = 18/369 (5%) Strand=Plus/Minus Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 |||||| | || | |||||||| |||||| || || || || || || ||||| |||| Sbjct 1219375 CATCAGCATGAAGGCGTCGGCCAAACCTTGGACACCTATTCCTATCGGGCGATGTCGCAT 1219316 Query 65857 ATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATT 65916 ||| | |||||||| | |||||||| ||| | ||||| |||||||||| ||| Sbjct 1219315 GTTGCTCTTCCGTGCCTCAGGAATAGGGTAGTGATTTCTGTCGATGATGCGATTCAGATT 1219256 Query 65917 GCGTGTCACCACATGCACGAT--ACGTC-GCAATTGTTCGAAATCAAAATGTTTAGGACG 65973 ||||||| || | || | || || || ||| ||| ||| | | ||| Sbjct 1219255 TCGTGTCATGACCTTTACCACCGACTTCAGC-----TTC----TCATAAT-TAAATGACT 1219206 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || | | | | |||||||||||||||| | || || || ||||| || ||||| Sbjct 1219205 TTC-----TTCTAGGCTCCACAAACTTGGGAAGCGAAACTGACGCAAGGTTACACACAGC 1219151 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 | ||||| | ||| ||||||| | ||||||||| || || | ||| ||| || Sbjct 1219150 GACTTCGTCTCTGCCAGTAAACTCGACCACTTCGGTGCATAGGTTGCCGCATTTTATCGT 1219091 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 |||| ||||| || || ||||| |||||| || || ||||||||||| |||||||| Sbjct 1219090 CCCCAGATTCTTCTGGTTGCTCTTCTTATTGCAAGCGTCTTTGTACATCATATACGGAGT 1219031 Query 66154 GCCGGTCTC 66162 ||| || || Sbjct 1219030 GCCTGTTTC 1219022 Score = 131 bits (144), Expect = 1e-25 Identities = 303/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | |||||| || || | || | | ||||||||| | ||| | | | Sbjct 1181337 CAGCTTGCCTCGAGGGCAGCGTAGTATACGCATTCGAAAATGTTTTTATTTAATCTCCTG 1181396 Query 65771 GCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 || || ||| ||| | || ||||| || || | || | ||| || ||||||||||| Sbjct 1181397 GCTTCTGGGCTGTCGAAGGG-ATACCGCAGCATCATGAACGCGTCTGCGAGACCTTGAAC 1181455 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889 || | ||||| ||||| || | || || | | ||| ||||| | ||||||||| Sbjct 1181456 ACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCTTCAGGGATAGGGTAGTA 1181515 Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTG 65949 || | ||||| | |||||||| |||||||||| | || | || | | | | || Sbjct 1181516 GTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACAGCTTTTAGTTT 1181575 Query 65950 TTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGC 66009 ||| ||| ||| || || | | ||| || ||| |||| ||||||| Sbjct 1181576 GTCGTAATTGAAAGTCTT----CGTT------TCCCGATCA--ACATACTTCGGAAGGGA 1181623 Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 ||||| || | |||||||||||| | || || || ||||| |||||||| || Sbjct 1181624 CAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGT 1181683 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 || | ||| || | |||||||| | |||| || || ||||| | |||||| || Sbjct 1181684 ACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGC 1181743 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 |||||||||||||||||||| || || ||||| Sbjct 1181744 GTCCTTGTACATCATGTACGGCGTCCCTGTCTC 1181776 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| |||||||||||||| ||| ||||| || |||| | || || | Sbjct 1218740 CATGAAAAGATCGGGTATCCAGAGGGCTCCGAACAGATCTCGAGCTCTACGTTCTTCCTT 1218681 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| | || | || ||| | ||| || || |||||| |||||| || || || || Sbjct 1218680 GCCGTGGCTCTTCCTCATGTCCAAGAAGTCGAAAATGTCGAAATGCCACGGCTCTAGATA 1218621 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 ||||| | |||| | || || || || || ||||| || || ||||| Sbjct 1218620 TATGGCCATACTGCCCCTCCGCTTCCCACCCCCCTGGTCCACATACCGAGC 1218570 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 65075 GAATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCG 65134 || || ||||| |||| ||||| | || || |||| ||||| || ||||||| || Sbjct 1180473 GAGTCAACCGTAAACTTAATCGCGTCCGCCGCTGCCTGCGTCCTCAGGTAGTACAGTCCC 1180532 Query 65135 GTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGC 65194 ||||| |||||||| | ||| | ||||||||||| | || | || || || | || Sbjct 1180533 GTCTTTAGGCCAGCTCTCCAGCCGTAGAAATGCATTGTGGAAAGCTTGGCGTAGGTAGGG 1180592 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 | | || ||| || |||| |||||| || ||||| ||| | | | ||| |||| Sbjct 1180593 TTGATCATATGAATGTTCAGCGACTGGGATTGGTCGATATAAGGCGCTCTGTCTACAGCG 1180652 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG 65301 | ||| | || ||| | |||||||| || || |||||||| Sbjct 1180653 AGGTCTAGAATCACACGCTGCTTGATCTCCCACACAGTTTTGTACAG 1180699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563779691440